Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq471 210 3e-52 seq657 170 3e-40 >seq471 Length=29810 Score = 210 bits (232), Expect = 3e-52 Identities = 198/248 (80%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||| ||||| |||||| |||||||||||||||| |||||||||||| ||| Sbjct 23946 TCATTGTAGCGCACGTGCAGCCCAGGTCATCTAAGGGCATCACGGACCTGTTATTGGCTC 23887 Query 76 AAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA-GT 133 ||||||| | | | | | |||| |||||||||||||| | |||||| | Sbjct 23886 GAACTTCCTTGAGATAAACTCTCAAT-GTCCCTCTAAGAAGTCTTT-----ACCATACGA 23833 Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 |||| |||||||| ||| ||||||||| ||||||||||||||||| ||||| Sbjct 23832 ATATGGTAATACTATTTAGTAGGCCGAGGTCTCGTCCGTTATCGGAATTAACCTGACAAG 23773 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 |||| |||| ||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 23772 TCACCTCACCGACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGATCTTTT 23713 Query 251 AATCTGTC 258 ||||||| Sbjct 23712 CATCTGTC 23705 >seq657 Length=2482312 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1732 CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1673 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct 1672 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTTAATCTGTC 1616 Score = 105 bits (116), Expect = 1e-20 Identities = 88/103 (85%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| Sbjct 1948 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 1890 Query 76 AAACTTCCAT-TGGCTGGAA-GCCAATAGTCCCTCTAAGAAGC 116 || ||| ||||| || ||| | ||||||||||||||| Sbjct 1889 --TTTTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGC 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796789795482