Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq471 210 3e-52
seq657 170 3e-40
>seq471
Length=29810
Score = 210 bits (232), Expect = 3e-52
Identities = 198/248 (80%), Gaps = 11/248 (4%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||||||| ||||| |||||| |||||||||||||||| |||||||||||| |||
Sbjct 23946 TCATTGTAGCGCACGTGCAGCCCAGGTCATCTAAGGGCATCACGGACCTGTTATTGGCTC 23887
Query 76 AAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA-GT 133
||||||| | | | | | |||| |||||||||||||| | |||||| |
Sbjct 23886 GAACTTCCTTGAGATAAACTCTCAAT-GTCCCTCTAAGAAGTCTTT-----ACCATACGA 23833
Query 134 CGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190
|||| |||||||| ||| ||||||||| ||||||||||||||||| |||||
Sbjct 23832 ATATGGTAATACTATTTAGTAGGCCGAGGTCTCGTCCGTTATCGGAATTAACCTGACAAG 23773
Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250
|||| |||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 23772 TCACCTCACCGACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGATCTTTT 23713
Query 251 AATCTGTC 258
|||||||
Sbjct 23712 CATCTGTC 23705
>seq657
Length=2482312
Score = 170 bits (188), Expect = 3e-40
Identities = 108/117 (92%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1732 CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1673
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 1672 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTTAATCTGTC 1616
Score = 105 bits (116), Expect = 1e-20
Identities = 88/103 (85%), Gaps = 5/103 (5%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 1948 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 1890
Query 76 AAACTTCCAT-TGGCTGGAA-GCCAATAGTCCCTCTAAGAAGC 116
|| ||| ||||| || ||| | |||||||||||||||
Sbjct 1889 --TTTTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGC 1849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796789795482
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |