Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq657 497 3e-138 seq471 466 6e-129 seq380 453 4e-125 seq191 111 5e-22 seq1255 98.7 3e-18 >seq657 Length=2482312 Score = 497 bits (550), Expect = 3e-138 Identities = 352/397 (89%), Gaps = 6/397 (2%) Strand=Plus/Minus Query 141 CTTAACGCCAGAAAA-TGGTCGGTGA-AGACCAGTTCCGCTTCATT-GATTAAGTaaaaa 197 ||||| || ||||| ||||| | |||||||| | |||| | || |||||||| | Sbjct 7310 CTTAATGCTAGAAACGTGGTCCTTTTGAGACCAGTCTCCTTTCAATCGAGTAAGTAAAGA 7251 Query 198 aaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTATTCTACACCT 256 |||||| || |||||||||||||| ||| ||||| | |||||||||||||||||| | Sbjct 7250 AACGATGAGAATAGTGGTATTTCACCGGCGACCGAA--GTCTCCCACTTATTCTACACTT 7193 Query 257 CTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCT 316 |||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 7192 CTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCT 7133 Query 317 GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 7132 GATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGG 7073 Query 377 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7072 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT 7013 Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| Sbjct 7012 AAGAGAGTCATAGTTACTCCCGCCGTTTAGTAGCGCTTAAGTGAATTTCTTCACATTGAC 6953 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||| | ||||||||||||||||||||| ||||||| Sbjct 6952 ATTCATACCACTGGGCAGAAATCACATTGTGTCAACA 6916 Score = 111 bits (122), Expect = 5e-22 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 7545 CTTTTACTCTACGTGAGGTTTCTGTCCTCACTGAGCTAGCCTTAGGACACCTGCGTTACC 7486 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | | ||||| Sbjct 7485 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGATCAGGATC 7426 Query 127 G 127 | Sbjct 7425 G 7425 >seq471 Length=29810 Score = 466 bits (516), Expect = 6e-129 Identities = 413/514 (80%), Gaps = 13/514 (3%) Strand=Plus/Minus Query 21 GAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTG 80 ||||||||||||||| |||||| ||||||| || ||||||| ||||| |||||||| Sbjct 20587 GAGATTTCTGTTCTCTCTGAGTCAACCTTAGGGCATCTGCGTTGCAGTTTAGCAGATGTG 20528 Query 81 CCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGAC 140 ||||||||||||||||||||| |||| |||| || | | |||| || Sbjct 20527 CCGCCCCAGCCAAACTCCCCATCTGAATATGTTCTCTAGATGAATCGCATTGCTG----- 20473 Query 141 CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaC 200 ||| | ||| || || | || | | || | || || || |||| | | ||| Sbjct 20472 CTTGAATCCACAACATATTTTGT-ATGT----TTTCATTTAATAGAGTAAGCAGAGCAAC 20418 Query 201 GATAAGGGTAGTGGTATTTCACTTGCG---CCGAAACGGCTCCCACTTATTCTACACCTC 257 ||||| ||||||||||||| | ||||| | ||||||| ||||||||||| | Sbjct 20417 ATCGAGGGTCGTGGTATTTCACTGTTGTTACCGAAGCAACTCCCACGTATTCTACACCCC 20358 Query 258 TCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG 317 |||||| || ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 20357 CCAAGTCGTTCTACAAAATCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTT 20298 Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 ||| |||||||||||||||||||||||||||||||||||| |||| | |||||||| || Sbjct 20297 ATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGTTGGGGACAGTAGG 20238 Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 20237 AATCTCGTTGATCCATTCATGCGCGTCATTAATTAGACGACGAGGCATTTGGCTACCTTA 20178 Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||| | | ||| Sbjct 20177 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTATACGAATTTCACCGTAGTAACA 20118 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||| || Sbjct 20117 TTCAGAGCACTGGGCAGAAATCACATTGCGTAAA 20084 Score = 453 bits (502), Expect = 4e-125 Identities = 417/524 (80%), Gaps = 15/524 (3%) Strand=Plus/Minus Query 14 TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAAC 73 |||||| |||||||||| |||| |||||| ||||||| || ||||||| | ||||| | Sbjct 26999 TCTACAAGAGATTTCTGGTCTCTTTGAGTCAACCTTAGGGCATCTGCGTTGTTGTTTAGC 26940 Query 74 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC 133 |||||||||||||||||||||||||||| |||| |||| || || ||| | Sbjct 26939 AGATGTGCCGCCCCAGCCAAACTCCCCATCTGAATATGTTCTCTACGTAAATCACGCAAT 26880 Query 134 GAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTa 193 || | || | ||| || || |||| | || ||| || || ||||| Sbjct 26879 AAATGCGTTTGATTCCACAATATCAA-----AAGAT-ACTTTTACTTTATAGAGTAAGTT 26826 Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCAC-----TTGCGC-CGAAACGGCTCCCACTTAT 247 | ||| || ||| |||||||||||| || | || ||| |||||| ||| Sbjct 26825 GAGCAACATTATAGGTCGTGGTATTTCACGATTGTTACTTGCGTAAC---TCCCACGTAT 26769 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 ||| ||| | |||||| | ||||| || ||||||||||||||||||||||||||||| Sbjct 26768 TCTCTACCCCATAAGTCACTCGACAAAATCAGACTAGAGTCAAGCTCAACAGGGTCTTCT 26709 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||| ||| |||||||||||||||||||||||||||||||||||| | || | | Sbjct 26708 TTCCCCGCTTATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGCAGTTGG 26649 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 26648 GGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCATTAATTAGACGACGAGGCATTT 26589 Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 487 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 26588 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAAGCGAATTTCAC 26529 Query 488 CACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | | |||||||||||||||||||||||||||||||||||| || Sbjct 26528 CGCGATGACATTCAGAGCACTGGGCAGAAATCACATTGCGTAAA 26485 Score = 107 bits (118), Expect = 6e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21 GAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTG 80 ||||||||||||||| |||||| ||||||| || ||||||| ||||| |||||||| Sbjct 21113 GAGATTTCTGTTCTCTCTGAGTCAACCTTAGGGCATCTGCGTTGCAGTTTAGCAGATGTG 21054 Query 81 CCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||||||||||||| |||| |||| Sbjct 21053 CCGCCCCAGCCAAACTCCCCATCTGAATATGT 21022 >seq380 Length=884649 Score = 453 bits (502), Expect = 4e-125 Identities = 417/524 (80%), Gaps = 15/524 (3%) Strand=Plus/Minus Query 14 TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAAC 73 |||||| |||||||||| |||| |||||| ||||||| || ||||||| | ||||| | Sbjct 20936 TCTACAAGAGATTTCTGGTCTCTTTGAGTCAACCTTAGGGCATCTGCGTTGTTGTTTAGC 20877 Query 74 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC 133 |||||||||||||||||||||||||||| |||| |||| || || ||| | Sbjct 20876 AGATGTGCCGCCCCAGCCAAACTCCCCATCTGAATATGTTCTCTACGTAAATCACGCAAT 20817 Query 134 GAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTa 193 || | || | ||| || || |||| | || ||| || || ||||| Sbjct 20816 AAATGCGTTTGATTCCACAATATCAA-----AAGAT-ACTTTTACTTTATAGAGTAAGTT 20763 Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCAC-----TTGCGC-CGAAACGGCTCCCACTTAT 247 | ||| || ||| |||||||||||| || | || ||| |||||| ||| Sbjct 20762 GAGCAACATTATAGGTCGTGGTATTTCACGATTGTTACTTGCGTAAC---TCCCACGTAT 20706 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 ||| ||| | |||||| | ||||| || ||||||||||||||||||||||||||||| Sbjct 20705 TCTCTACCCCATAAGTCACTCGACAAAATCAGACTAGAGTCAAGCTCAACAGGGTCTTCT 20646 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| | | Sbjct 20645 TTCCCCGCTTATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGTTGG 20586 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||||| Sbjct 20585 GGACAGTAGGAATCTCGTTGATCCATTCATGCGCGTCATTAATTAGACGACGAGGCATTT 20526 Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 487 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 20525 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTAAGCGAATTTCAC 20466 Query 488 CACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | | |||||||||||||||||||||||||||||||||||| || Sbjct 20465 CGCGATGACATTCAGAGCACTGGGCAGAAATCACATTGCGTAAA 20422 >seq191 Length=200012 Score = 111 bits (122), Expect = 5e-22 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 84468 CTTTTACTCTACGTGAGGTTTCTGTCCTCACTGAGCTAGCCTTAGGACACCTGCGTTACC 84527 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | | ||||| Sbjct 84528 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGATCAGGATC 84587 Query 127 G 127 | Sbjct 84588 G 84588 >seq1255 Length=2071 Score = 98.7 bits (108), Expect = 3e-18 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| ||||||| ||| |||| ||||||||||||||||||| Sbjct 1439 CTTTTACTCTACGTGAGGTTTCTGTCCTCACTGAGCTAGCCTTAGGACACCTGCGTTACC 1380 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 ||| |||||||| ||||||||| |||||||||| |||| || Sbjct 1379 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCA 1338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635178382656