Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq434 205 1e-50 seq1322 170 3e-40 >seq434 Length=366605 Score = 205 bits (226), Expect = 1e-50 Identities = 216/292 (74%), Gaps = 47/292 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 297626 TCCTTCAGTGTAGCGCGCGTGCGGCCTAGAACATCTAAGGGCATCACAGAGCTGTTATTG 297567 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| |||||||||||||| Sbjct 297566 C-TCAATCT-CGTGCGGCTTGAAGCCGCCTGTCCCTCTAAGAAGATTCGTTTGTACGTCG 297509 Query 118 --------AGCCAC-CAACCATAGTCGATGG----------------------GGCTATT 146 | || | | ||| | |||| || | ||||| Sbjct 297508 GTAGTAAAAACCGCTCGACCGAAATCGAGGGCCTTCAAGATACCAGAAAGTACGCCTATT 297449 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 297448 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 297389 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 297388 GAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 297337 Score = 185 bits (204), Expect = 1e-44 Identities = 111/117 (95%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| Sbjct 109386 CTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 109327 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 109326 ACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 109270 Score = 98.7 bits (108), Expect = 2e-18 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 109574 TCCTTCAGTGTATCGCGCATGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 109515 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114 |||| | || |||| |||| | |||| |||||||| Sbjct 109514 -TTCAATC-TCGTGCGGCTAGAAGTCGCCTGTCCTTCTAAGAA 109474 >seq1322 Length=25083 Score = 170 bits (188), Expect = 3e-40 Identities = 196/266 (74%), Gaps = 31/266 (12%) Strand=Plus/Minus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 81 ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| || Sbjct 10399 TAGCGCGCGTGCGGCCCAGAACAGCTAAGGGTATCACAGACCTGTTATTGC-TCAATCT- 10342 Query 82 CCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG------CCAC-CAACCATAGTC 134 | || | |||||| |||||||||||| | || || | | |||| | || Sbjct 10341 CGTGCGGATAGAAGCCGCCTGTCCCTCTAAGAGGATAGTAAAAACCGCTCGACCAAAATC 10282 Query 135 GATG----------------------GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAT 172 || | || ||| |||||||| || |||||| |||||| Sbjct 10281 GAGGACCTTCAAGATACCAGAAAGTAGGTCTACTTAGCAGGCTAGAGTCTCGATCGTTAG 10222 Query 173 CGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG 232 | |||||||||||||||||| |||| | |||||||||| || | | ||||||||| | | Sbjct 10221 CAGAATTAACCAGACAAATCGCTCCGCAAACTAAGAACAGCTAAGTACCACCACCTACCG 10162 Query 233 AATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||| Sbjct 10161 AATCAAGAAAGAGCTATCAATCTGTC 10136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796769371008