Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq434 210 4e-52 seq1322 93.3 8e-17 seq219 84.2 4e-14 >seq434 Length=366605 Score = 210 bits (232), Expect = 4e-52 Identities = 205/258 (79%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| ||||||| || | ||||| ||||||||| |||||| Sbjct 297525 CTTCTTAGAGGGACAGGCGGCTTCAAGCCGCACGA-GATTGAG-CAATAACAGCTCTGTG 297582 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||| |||||||||||||||||||||| || || || | | || Sbjct 297583 ATGCCCTTAGATGTTCTAGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTAT-CTTCC 297641 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| |||| | |||| | | || ||| ||||||| ||||| | | ||| Sbjct 297642 C--TGGCCGAAAGGCCCAAGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 297699 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| ||| |||||| Sbjct 297700 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCATTGATT 297759 Query 311 ACGTCCCTGCCCTTTGTA 328 || ||||||||||||||| Sbjct 297760 ACATCCCTGCCCTTTGTA 297777 Score = 203 bits (224), Expect = 6e-50 Identities = 203/257 (79%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||| |||| || || | ||||| || | |||| ||||||||||||||||| Sbjct 109474 TTCTTAGAAGGACAGGCGACTTCTAGCCGCACGA-GATTGAA-CAATAACAGGTCTGTGA 109531 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||||||||||||||||||| ||||| |||||||| || || || || | || Sbjct 109532 TGCCCTTAGATGTTCTGGGCCGCATGCGCGATACACTGAAGGAATCAGCGTGT-CTTC-- 109588 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 | ||||| |||| | ||||| | | || ||| ||||||| ||||| | | |||| Sbjct 109589 CGTGGCCAAAAGGCCCGGGTATCCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGTTTGC 109648 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 ||||||| | | | |||||||||| || |||||||||| ||||| ||| ||||||||||| Sbjct 109649 AATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTA 109708 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 109709 CGTCCCTGCCCTTTGTA 109725 >seq1322 Length=25083 Score = 93.3 bits (102), Expect = 8e-17 Identities = 78/92 (85%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 74 TCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| ||||| | | ||| || | ||||| |||||||||||||||||| Sbjct 10310 TCTTAGAGGGACAGGCGGCTTCTATCCGCACGA-GATTGAG-CAATAACAGGTCTGTGAT 10367 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||||||| ||||||||||||||||||||||| Sbjct 10368 ACCCTTAGCTGTTCTGGGCCGCACGCGCGCTA 10399 >seq219 Length=398176 Score = 84.2 bits (92), Expect = 4e-14 Identities = 155/222 (70%), Gaps = 9/222 (4%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 || |||||||||||| |||| || || | || ||||| ||||| |||||| ||||| | Sbjct 206952 GCGATAACAGGTCTGCGATGTTCTCAGCTATTTTGGGCTGCACGTGCGCTAAACTGATGG 206893 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCT---GGGTAATCTTGTTAAACT--CTG 228 | || ||| || || | |||| | || | ||| | | | || | ||| Sbjct 206892 AAGGAATCAGTCTGTCTACTGCGGTGGAAAGGCTCCAGTATAACCGTTTGAATCCTCCTG 206833 Query 229 TCGTGCTGGGGA--TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 || || |||| | |||| |||||||| | | | ||||||| || || ||||||| Sbjct 206832 GCG-GCAAGGGACTTGGAGCGCA-CAATTATTCCACATAAACGAGGGATTCCCAGTAAGC 206775 Query 287 GCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| |||| ||| |||||||||||| | |||||||||||| Sbjct 206774 GCGACTCATAAGCTCGCGTTGATTACATATCTGCCCTTTGTA 206733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947162415104