Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_029107.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq3537 172 1e-38 seq3688 150 5e-32 seq3855 129 2e-25 >seq3537 Length=1714 Score = 172 bits (190), Expect = 1e-38 Identities = 317/458 (69%), Gaps = 14/458 (3%) Strand=Plus/Plus Query 16837 ACGGGGCTGAGCTGATCCCGTTTGGCTGGATCAAGCACGTTCACAAAGCCAAGTCGGGCT 16896 |||| || || ||| ||||| |||||| | || ||||| ||||| ||||||| Sbjct 357 ACGGTGCCGAACTGTGGCCGTTCGGCTGGCTGGTACATACCCACAATGCCAAATCGGGCT 416 Query 16897 ATATGGCTCGCGCCGGCCTGCACCGCGTGCTGGCCTGGCCGTACCTGTTCAAGACCTACG 16956 | | || | | || | ||||||| |||| ||||||||||||||||||| ||| Sbjct 417 ACGTTGCGCAGTCAGGATTATACCGCGTACTGGTGTGGCCGTACCTGTTCAAGAATTACA 476 Query 16957 CGGTGCGCGACCTGGCCGAGCTGCTGGAGATTTACGGCATGCCCATCCGGCTGGGGAAGT 17016 ||||| || | |||||| | ||||||||||||||| ||||| ||| | || || | Sbjct 477 GTGTGCGTGATTTTGCCGAGTTCCTGGAGATTTACGGCTTGCCCGCCCGCGTTGGCAAAT 536 Query 17017 ACCCGAGCGGCGCGGGCGACAAGGAAAAGGCCGCACTGCTGCGTGCA---GTCACCCAAC 17073 || | ||| | ||| | |||| ||| ||||||| ||| || || || Sbjct 537 ACATGGAAGGCTCATCTGACGAACAAAAAAACGCGCTGCTGCATGCCCTGGTGAC---AC 593 Query 17074 TGGGCCACGCGGCGGCCGGCATCATCCCCGACGGCATGAACATCGAATTCCAGGCCGCAA 17133 | |||||| || ||||| || ||||| |||| | ||| |||| | ||||| Sbjct 594 TCGGCCACAATGCCGCCGGTATTATCCCGATGGGCAGCGAAATCAAATTTGAAGCCGCTG 653 Query 17134 GC-ACCGGCA--CTGAAGTCCCGTTCGAAACCATGTACGACATGATG-GAGCGGGCCGAG 17189 | || |||| |||| ||| || | ||| ||| || || || || | | Sbjct 654 CCGACGGGCAATCTGA---CCCATTTATGGCGATGATCGAT-TGGTGCGAACGCACGGTC 709 Query 17190 TCCAAAGCGATCCTGGGAGGCACGCTGACCAGCCAGGCGGACGGCAAGACTTCGACCAAT 17249 || ||||| | || || || || || |||||||||||||||||||| || || ||||| Sbjct 710 TCAAAAGCCGTACTCGGGGGAACACTCACCAGCCAGGCGGACGGCAAAACCTCAACCAAC 769 Query 17250 GCGCTGGGCAACGTCCACAACGAAGTGCGCCACGACAT 17287 || |||||||||||||||||||| |||||||||||||| Sbjct 770 GCCCTGGGCAACGTCCACAACGACGTGCGCCACGACAT 807 >seq3688 Length=22785 Score = 150 bits (166), Expect = 5e-32 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 18254 CCGGCTGGAGACCATCTATCGGACGAACATACAGAGCGCCATGATGGCGGCCCGCTACAA 18313 ||||||||||||||| | ||| || || | || ||| ||||| | ||||| | Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 18314 GCAGATGCTGGCCAATGTCCGCTTCCGGCCCTACTGGCAGTACATCGCCGTGATGGACGG 18373 || | ||| | || ||| | ||||||||||||||||| | || ||||||||| | Sbjct 9774 GCGGCTGCGCGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGACAG 9833 Query 18374 TCGCACGCGCCCGTCGCACGCGGCGCTGCATGGCCGGGTGTACCGCTATGACGATCCCAT 18433 | ||| ||||| || || ||||||||||||||||||| ||| ||||||||| | Sbjct 9834 CCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCGGG 9893 Query 18434 TTGGCAGTACCTGTTTCCGCCCAACGGTTACAACTGCCGATGCCGGGTCGTGGCGCTG 18491 ||| | |||||||||||| ||||| ||||||||||| |||||||| ||||||| Sbjct 9894 CTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCGGGTACGGGCGCTG 9951 Score = 134 bits (148), Expect = 4e-27 Identities = 304/446 (68%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 9083 TCCAGGCGTTCGTCAAGCTGTCAGCCGAGGAGTACGGCGTCCAGCGCGGCGGCAGCAAAG 9142 ||||||| || | | ||||| ||| ||||||| || | || |||||||| |||| Sbjct 659 TCCAGGCATTGATTGACCTGTCGATTGAGCAGTACGGGGTAAAACGTGGCGGCAGAAAAG 718 Query 9143 GCAACGTGACCCTCCACAGCTTCGACGGCCGTTACAAGGTCCGACTGGCCCATGCCG-AC 9201 |||| ||||| || | ||| || ||||| |||||||| | ||| |||| | || Sbjct 719 GCAATGTGACGCTGTATTCCTTTGATGGCCGCTACAAGGTTATGCGCGCC-ATGCAGGAC 777 Query 9202 ACCATGAAGTTTGACGAGCGTCTGCAGGCCGCCAAGACCATCATTGACGACCTGATGACC 9261 ||| | ||||| |||||| | |||||||||||| | | ||||| || ||||| Sbjct 778 CGCATTACCTTTGATGAGCGTATCCAGGCCGCCAAGGCATTGATTGATGATTGCATGACG 837 Query 9262 GAGTGGACAGAGGGATCGCGCCCCGAAATCAAGGCCATCAT---CCAGCGCGCTTTCGAC 9318 |||||||| || ||||||| || | |||||| || |||| ||| |||| | Sbjct 838 GAGTGGACGCAGAATGCGCGCCCGGAGCTGCTGGCCATTATTGACCAG-GCGTTTTC--C 894 Query 9319 ACCGACAAAGAGGGCAACTTGAACACCGGCCGCGTGCTGTCGCTGCGCAGTCTGGACATC 9378 |||||||| | || | | || | | ||| | ||| |||||| | | || || Sbjct 895 ACCGACAAGAACGGTGATATTAATCCGGCCCGTATTCTGCAGCTGCGTCGCCATGATATT 954 Query 9379 AAGGATGCGCGTTGGCAGCAGGCGATGACCGCGATTGGCGACAGC-GTCCAGGTCGTGGG 9437 | || |||| ||| || ||||||| ||| ||||| ||| || ||||| ||| | Sbjct 955 ACCGACCCGCGCTGGTTGCGGGCGATGGATGCG-CTGGCGGAAGCGGTGCAGGTGGTGAG 1013 Query 9438 CACCAAGAGCTACGTGCGCTTCTATGAGCGCATCGAGGGCACGGACGAGTATCAGGCCG- 9496 || |||||||||| | ||| | || ||||| ||||| | || | | |||| ||||| Sbjct 1014 CAGCAAGAGCTACATTCGCCTTTACGAGCGTATCGACGAGACCGGGCAATATC-GGCCGC 1072 Query 9497 TGTTGCTCGACCTAGCCAAGGTGTGA 9522 ||| ||| || | || ||||||| Sbjct 1073 TGTCGCTGGATATTGCAGGGGTGTGA 1098 Score = 127 bits (140), Expect = 5e-25 Identities = 429/660 (65%), Gaps = 6/660 (1%) Strand=Plus/Plus Query 16680 CTGGACGGCATCGGACACGGGTTCTCCATGCAGGAAATCGAGTGGCAGCAGATCGGCAAG 16739 ||||||| ||| || ||||| || || |||||| | |||| | ||| | || Sbjct 8208 CTGGACGCCATTGGCCACGGCTTTGCCGCCGTGGAAATGGTGTGGAAACAGGCGGAAAAC 8267 Query 16740 AACTGGCTGCCCAAGGCGCTGCACCACCGGCCGCAATCCTGGTTTCAGGTCTCCCGCTTT 16799 | |||||||||| || | || | || |||||| |||||| ||| | | | | Sbjct 8268 ATCTGGCTGCCCTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACCGCAACCCAT 8327 Query 16800 GACCAGAACGTCCTGCACCTGCGCGACCACTCGCCGGACGGGGCTGAGCTGATCCCGTTT 16859 |||| |||| | | |||| ||| | | ||||| |||||||| | || ||| Sbjct 8328 GACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGCTTAATCCCTTT 8387 Query 16860 GGCTGGATCAAGCACGTTCACAAAGCCAAGTCGGGCTATATGGCTCGCGCCGGCCTGCAC 16919 |||||| | ||| || | ||||| |||| | || ||| ||| | Sbjct 8388 GGCTGGCTGCTGCATCGCCATCAGGCCAAAAGCGGCTGGGTAGCCGAAAGCGGTCTGTTC 8447 Query 16920 CGCGTGCTGGCCTGGCCGTACCTGTTCAAGACCTACGCGGTGCGCGACCTGGCCGAGCTG 16979 || || |||| ||| | ||||||||||||| || | || |||||||| || | Sbjct 8448 CGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCGTGACCTGGCGGAATTT 8507 Query 16980 CTGGAGATTTACGGCATGCCCATCCGGCTGGGGAAGTAC-CCGAGCGGCGCGGGCGACAA 17038 ||||| || |||||| |||| | ||| |||| | || |||| ||| || | || | Sbjct 8508 CTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGA-CGGGGCCAGTGAAGA 8566 Query 17039 GGAAAAGGCCGCACTGCTGCGTGCAGTCACCCAACTGGGCCACGCGGCGGCCGGCATCAT 17098 |||||| | |||||| | || | | | ||||| || || | |||||| || Sbjct 8567 AGAAAAGAACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATAACGCCGGCGGCATTAT 8626 Query 17099 CCCCGACGGCATGAACATCGAATTCCAGGCCGCAAGC-ACCGGCACTGAAGTCCCGTTCG 17157 || ||| ||| ||| || || |||| | | |||| | | ||||||| Sbjct 8627 CCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGGGCAG-GTCGACCCGTTCC 8685 Query 17158 AAACCATGTACGACATGATG-GAGCGGGCCGAGTCCAAAGCGATCCTGGGAGGCACGCTG 17216 | ||| | | || || || | || ||||||| | || ||||| ||||| ||| Sbjct 8686 AGTATATG-ATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTCTGGGCGGCACCCTG 8744 Query 17217 ACCAGCCAGGCGGACGGCAAGACTTCGACCAATGCGCTGGGCAACGTCCACAACGAAGTG 17276 |||| ||||||||||||||||| ||||| || || |||||||| || ||||||||| Sbjct 8745 ACCACCCAGGCGGACGGCAAGAGCAGCACCAACGCCCTAGGCAACGTGCATAACGAAGTG 8804 Query 17277 CGCCACGACATCACAGCGTCCGACTGGCGGCAGCTTTCGGCCACGCTGACCCGCGACATG 17336 |||||||| | || || ||| | |||||| | | |||||||||||| ||| || Sbjct 8805 CGCCACGAGCTGACCGCCAGCGATGCGGTGCAGCTGGCCGGCACGCTGACCCGTGACCTG 8864 >seq3855 Length=27953 Score = 129 bits (142), Expect = 2e-25 Identities = 329/492 (67%), Gaps = 8/492 (2%) Strand=Plus/Minus Query 17994 AAGGGATTCCAGATCAGCTGGAACTGGTATGAGGTCCGCGACGCCGCCCACGCCCAGGCG 18053 ||||| | ||||||| ||||||||||| |||| | | |||| ||||||| | Sbjct 15376 AAGGGGTATCAGATCACCTGGAACTGGTTTGAGCAACAAGCGGCCGTTCACGCCCGGATA 15317 Query 18054 TTCACCGTGGCCAAGGTGGCGCGCATGGACGTGCTGCAGGACATCCGCGATGCGGTGGAG 18113 || ||||| ||||||| || ||| ||||||| ||| | ||||| || | |||||| Sbjct 15316 TTTACCGTCGCCAAGGCGGAGCGGCTGGACGTCCTGAGTGCGATCCGTGACGAGGTGGAT 15257 Query 18114 GCCAGCCTGGAGAAAGGGTGGAGCCTGGGCCAA-TTCAAGAAGAACCTGACGCCGGTCCT 18172 ||| | |||| | || || | || | | | |||||||| || Sbjct 15256 AG-AGCAAAATCACAGGGAATATCCCGGCAGGACTTTATCGACACGCTGACGCCCCGGCT 15198 Query 18173 GCAGGCAAGGGGATGGTGGGGCAAGCAGGTCATCGTGGATTCGCAGGGCGGTGCCGAGAT 18232 ||| | ||||||||||| ||||||||| | ||||| |||||| |||||| Sbjct 15197 GCAAACGCTCGGATGGTGGGGGAAGCAGGTCGTGGTGGACAGCCAGGGCAATGCCGAAGC 15138 Query 18233 GGCCCAGCTGGGCAGCCCACGCCGGCTGGAGACCATCTATCGGACGAACATACA-GAGC- 18290 | || ||||||||| | || || |||| ||| || ||| ||| |||| | | Sbjct 15137 CGTGCAACTGGGCAGCGCCCGGCGTCTGGCGACGATATATA--ACGTCAATACCCGCGTA 15080 Query 18291 GCC-ATGATGGCGGCCCGCTACAAGCAGATGCTGGCCAATGTCCGCTTCCGGCCCTACTG 18349 ||| || ||| ||||| |||| |||||| |||||| | | | |||||||| Sbjct 15079 GCCTATAATGCCGGCC-GCTATGCACAGATGATGGCCACCGCAGACCTTTATCCCTACTG 15021 Query 18350 GCAGTACATCGCCGTGATGGACGGTCGCACGCGCCCGTCGCACGCGGCGCTGCATGGCCG 18409 |||||| ||||||| ||| | ||||| || || ||||| || || ||||||||| Sbjct 15020 GCAGTATGTCGCCGTCGGGGATAGCCGCACCCGGCCCTCGCATGCCGCCCTGCATGGCAA 14961 Query 18410 GGTGTACCGCTATGACGATCCCATTTGGCAGTACCTGTTTCCGCCCAACGGTTACAACTG 18469 ||| | || || || | ||| | ||||| | | ||||||||||| | ||||| Sbjct 14960 GGTCTTTCGTTACGATCACCCCTTCTGGCAAAGTCATTACCCGCCCAACGGGTTTAACTG 14901 Query 18470 CCGATGCCGGGT 18481 ||| |||||||| Sbjct 14900 CCGTTGCCGGGT 14889 Score = 98.7 bits (108), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 16932 TGGCCGTACCTGTTCAAGACCTACGCGGTGCGCGACCTGGCCGAGCTGCTGGAGATTTAC 16991 ||||||| | ||||||| ||| ||||| || | |||||| | |||||||||||| Sbjct 16336 TGGCCGTTTATCTTCAAGAATTACAGCGTGCGGGATTTCGCCGAGTTTCTGGAGATTTAC 16277 Query 16992 GGCATGCCCATCCGGCTGGGGAAGTACCCGAGCGGCGCGGGCGACAAG--GAAAAGGCCG 17049 || |||| | ||| ||||||| ||||| ||||||||| | | | || |||||| || Sbjct 16276 GGACTGCCGCTGCGGGTGGGGAAATACCCCAGCGGCGCGAGTGCCGAGCAGAAAAG--CG 16219 Query 17050 CACTGCTGCGTGCAGTCACCCAACTGGGCCACGCGGCGGCCGGCATCATCCCCGACGGCA 17109 | ||| |||| || || | | | |||| | ||| | || || || |||| ||||| Sbjct 16218 CCCTGATGCGGGCGGTGATGGATATTGGCCGCCGGGCCGGGGGGATTATTCCCGCCGGCA 16159 Query 17110 TGAACATCGAATTCCAGGCCGC 17131 ||| | | || || ||||||| Sbjct 16158 TGAGCCTGGAGTTTGAGGCCGC 16137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134083281698048