Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq3839 143 4e-29 seq2689 87.8 3e-12 seq3874 84.2 3e-11 >seq3839 Length=10135 Score = 143 bits (158), Expect = 4e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAA 196183 ||| | |||||||| || || || | ||||| |||||||| ||| |||||||| Sbjct 1825 GACAGAACCGGCACCGGAACCTTATCGATTTTCGGCCACCAGATGCGTTTCAATCTGCAA 1766 Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 ||||| || |||||||| ||||| ||| ||||||||| || |||||||| || ||| Sbjct 1765 GACGGTTTTCCGCTGGTGACCACCAAGCGCTGCCATCTGCGCTCAATCATTCACGAGCTG 1706 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 |||||||||||||||| ||||||||| | || ||| | ||||| || || Sbjct 1705 TTGTGGTTCCTCAACGGTGACACCAACGTTGGCTATCTGCACGACAATAAAGTTAGCATT 1646 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||| | || ||||| | || || | || |||||||| ||||||||||||||||| Sbjct 1645 TGGGATGAATGGGCCGATGAGAATGGCGATCTTGGGCCGGTATACGGTAAGCAGTGGCG 1587 Score = 140 bits (154), Expect = 5e-28 Identities = 224/319 (70%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 196781 TCTTGTCAGCTGTATCAGCG-TAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGC 196839 || |||||||| || ||||| | ||| | || ||||||||||| | |||||||| || || Sbjct 1405 TCCTGTCAGCTTTACCAGCGCTCGTGTG-ATGTGTTCCTCGGTCTGCCGTTCAATATTGC 1347 Query 196840 GTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTT 196899 ||| ||| ||||| | || ||| ||||||| ||| || | | | ||||| || Sbjct 1346 CAGTTATGCACTGCTGGTGCATATGATGGCGCAGCAGTGCGACCTTGAAGTCGGCGACTT 1287 Query 196900 CGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACA 196959 || ||||| || |||||| ||| | ||| ||| || ||||| ||| | || Sbjct 1286 TGTCTGGACCGGTGGTGACACCCATCTGTACAACAACCATATGGAGCAGACGCATTTGCA 1227 Query 196960 GCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTAT 197019 ||| ||| | || |||||| |||||| || | || |||||| || | | | Sbjct 1226 ACTGAGCCGTGAGCCAAAAGCGCTGCCGAAATTGATCATTAAACGCCGTCCTGCCTCGCT 1167 Query 197020 CTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAA 197079 || || || | ||||| || |||||| | | |||||||||||||||||| || || || Sbjct 1166 GTTTGACTATCAGTTCGATGATTTCGAAATAGAAGGCTACGATCCGCATCCTGCCATCAA 1107 Query 197080 AGCCCCGGTGGCTATTTAA 197098 || |||||||| |||||| Sbjct 1106 GGCACCGGTGGCGATTTAA 1088 >seq2689 Length=2575 Score = 87.8 bits (96), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 1460 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 1519 Query 4266 CAGGGTCGCCACATT-TTGT 4284 ||| | |||| ||| |||| Sbjct 1520 CAGAGGAGCCAAATTCTTGT 1539 >seq3874 Length=14813 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| ||||||||||| ||||||||||||| | || ||||||||||| |||||| Sbjct 5569 GTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGGCGCGGGTTCGAGTCCCGT 5628 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 5629 CCGTTCCGCCA 5639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771504131496960