Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq23911 275 1e-71 seq17525 134 2e-29 >seq23911 Length=2931 Score = 275 bits (304), Expect = 1e-71 Identities = 208/242 (86%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2760 TACTTGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAG 2701 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||| ||||||||||||||||| || | || || ||||||||||||||||| ||| Sbjct 2700 ACCTGTTGTTGCCTCAAACTTCCATGGGTTTGATACCCATAGTCCCTCTAAGAAG--AGC 2643 Query 121 CACCAACC--ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | ||| | || ||| | |||||||||||||||||||||||| |||||||| ||| Sbjct 2642 CCACAAGCAGATGCTCG-CAGCCCTATTTAGCAGGTTAAGGTCTCGTCCGTTATCGCAAT 2584 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||| |||||||||||||||| ||||| ||||||||||||||||||||| || ||||| Sbjct 2583 TAAGCAGACAAATCACTCCAAGGACTAAAAACGGCCATGCACCACCACCCGTAAGATCAA 2524 Query 239 GA 240 || Sbjct 2523 GA 2522 >seq17525 Length=20403 Score = 134 bits (148), Expect = 2e-29 Identities = 88/97 (91%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||| |||||||||||| |||||||| |||||||||| ||||||| Sbjct 4273 GTCTCGTTCGTTATCGGAACTAACCAGACAAAACACTCCACGAACTAAGAACAGCCATGC 4332 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 ||||| ||||||| || |||||||||||||||||| Sbjct 4333 ACCACACTCCATAGATTCGAGAAAGAGCTATCAATCT 4369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796596573474