Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 517 9e-142 seq2 334 6e-87 >seq4 Length=23952536 Score = 517 bits (572), Expect = 9e-142 Identities = 620/839 (74%), Gaps = 5/839 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || || || |||||||| ||||| ||||| ||| | || |||||| ||| |||| Sbjct 3358987 AGGCTGAGGCCTCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACT 3358928 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 ||| |||||| | || | || || || |||||| | || |||||||||| Sbjct 3358927 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCG 3358868 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || || || || ||||||||| | | || || ||| |||||||||||| | Sbjct 3358867 CCTCCGATGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3358808 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | || || ||||||||||| ||||| || || |||||||||||||| ||||||||||||| Sbjct 3358807 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGATGT 3358748 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||| || || |||||||| || || ||||| | |||||| || ||||||||| Sbjct 3358747 ACAGCGTGCTGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATG 3358688 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 |||| || || || || || || ||||| || || |||||||| || |||||| | Sbjct 3358687 CCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATTTCAT 3358628 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | |||| | ||||| || || | | || || || | || ||||| | || | Sbjct 3358627 CGAAGGCGGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCT 3358568 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 | ||||| |||||| | ||||||||| ||||||||||||| || ||||||||||||| Sbjct 3358567 TTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGA 3358508 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 ||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| || Sbjct 3358507 CCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCTGTGATGA 3358448 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG-GAGCGTGTGGGTGAGATTGTTCGT 61704 | ||| || || ||||| | ||||| | | | ||||| | |||||| | | Sbjct 3358447 TGTTC---CGGCATTTGGTGCAACGTCC-TAGCCGTGAGCGCATCATTGAGATCATCTCT 3358392 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || || || || || || ||||| || || ||| |||||||| | | || ||| Sbjct 3358391 GATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAAATTGATTGGC 3358332 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 |||||||||| | | ||||| ||||||||||||||||||| || ||||||||||| || Sbjct 3358331 ATGAATTGTGCATTGATGTCCGAGTATATTGAATTTGTTGCGGATCGTCTGTTGGTGGAA 3358272 Query 61825 TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884 | ||| | ||||| |||||||| || ||||| || ||||| ||||| ||| Sbjct 3358271 CTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCTTTATGGAGATGATCTCG 3358212 Query 61885 CTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 |||||||||||||| || || ||||||||| || ||||| ||||||||| |||| || Sbjct 3358211 CTGGATGGCAAGACTAACTTCTTCGAGAAAAAAGTTGGCGAATATCAACGTATGGGCGT 3358153 >seq2 Length=27840087 Score = 334 bits (370), Expect = 6e-87 Identities = 1135/1760 (64%), Gaps = 45/1760 (3%) Strand=Plus/Minus Query 65081 ACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTG 65140 || ||||| || || |||||||| || | || || | |||||| |||||||||||||| Sbjct 27785305 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 27785246 Query 65141 AGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCC 65200 || || || ||| | ||| ||||| || || | ||||||| ||||||| || || || Sbjct 27785245 AGACCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCT 27785186 Query 65201 ACATGCATATTCAACGACTGACTCTGATCGATGTAACGA-CCACGATCTGCAGCCATGTC 65259 ||||| ||||| || |||||||| ||||| || |||| || | ||| || ||||| | Sbjct 27785185 ACATGAATATTGAAAGACTGACTTTGATCAATA-AACGCTCCTCTATCAGCCGCCATTTT 27785127 Query 65260 AAT----GATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 || ||| ||| || || ||||| || || || |||| ||| | || Sbjct 27785126 TATAGTTGATTTGACT----GAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTT 27785071 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 | ||||| ||||| | || | ||||||||||| || || || |||| |||| Sbjct 27785070 TAGGAATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCT 27785011 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||||||| | | || | | || | | ||||| | || | || || | Sbjct 27785010 CGTCATCCCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAA 27784951 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | ||||| |||| || || | || ||||| || || || || || || ||| Sbjct 27784950 ATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCAT 27784891 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 | ||||| | ||||| ||||| ||||| || ||||||||||||| | || || |||| Sbjct 27784890 TATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTC 27784831 Query 65556 GCAATCCGTTCA----TTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 | |||| | | || || | | |||| || | ||| | | | | Sbjct 27784830 TGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTC----CAATCCCAAA--GATCTG 27784777 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 | | || | | |||||||| | |||| |||| | || | || || Sbjct 27784776 TTGGTGATTTTTTC----CACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCA 27784721 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | || | || || ||| || || || | || |||||||| || | || || Sbjct 27784720 ACATAAGTCTCATATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCA 27784661 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 | || || || |||||||| | |||| | | | ||| ||| || ||||| || Sbjct 27784660 TAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTA-GGA 27784602 Query 65792 ATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 ||||| ||| | | || | ||| || | ||||| ||||||||||| || ||||| || Sbjct 27784601 ATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTG 27784542 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 ||| ||||| || | | || || || | |||||||||||| ||||| || || ||| Sbjct 27784541 ACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATT 27784482 Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTCGCAAT--TGTTCGAAATCAAAATGTTTA 65968 || || || || | | | ||| || | | || || ||| || ||| Sbjct 27784481 TAAGTTTTTCGTAACGATTTTA--GTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTC 27784424 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 || | || ||||||| | ||| || | ||| || | || || Sbjct 27784423 ------TCCTGCGT---------CACAAACATATTAAGTGCGATAGACGCCAAATTACAC 27784379 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 |||||||| || || || || | ||| || || ||||| ||||||||||||||||| | Sbjct 27784378 ACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCATTTT 27784319 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 || || || | ||| ||||| || || || | || || | ||||| | | |||||| Sbjct 27784318 ATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAA 27784259 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| || ||||| ||||| || ||||||||||| |||||||| | ||||| | Sbjct 27784258 GGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAAGAGATTGAGCCTTAATA 27784199 Query 66209 GTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 || ||| | || | ||||| || | ||||||| ||| || ||||||| Sbjct 27784198 ACTCGATTCGCTCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAAATCTTCACCC 27784139 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 || || || | || | || || || ||||||||||| | ||||| || ||| | Sbjct 27784138 CAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAGTCTTCATTAGCT 27784079 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 || ||||| |||||| |||||||||||||| | || | || ||||||||||| || Sbjct 27784078 TCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGATCGCGTGCACGA 27784019 Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448 |||||||| | || |||||| | ||| | || || |||| || | ||||| Sbjct 27784018 TGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAA 27783959 Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508 || |||| || || || || | || | ||| || || || || || || || || Sbjct 27783958 GGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCAACATAACGC 27783899 Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 |||||||| || || || | ||||| ||||| | || || || |||| || || || Sbjct 27783898 GCGACATTATTAAATACTCTTAACATTGGTACTAATCCATTTGAAGTGCCGTTCGTTCCA 27783839 Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628 || | || ||| || || ||| ||||||||| || ||||| ||||| |||| | Sbjct 27783838 CAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAATGCCACCTGCCGAC 27783779 Query 66629 TTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTG 66688 || || || || || | | |||| || || || ||||| || ||| | Sbjct 27783778 TTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATTGAATCAGACACT 27783719 Query 66689 ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTG 66748 || || | || | |||||| | ||| || |||||| || | || || || Sbjct 27783718 ATAGTTAAAAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTT 27783659 Query 66749 GGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCA 66808 |||| || || ||||| || | ||| | ||||||| || || | ||| |||| Sbjct 27783658 GGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCAACTGCAGAATCA 27783599 Query 66809 ATGTTTTCGCCATGAATCCC 66828 || | ||||||||| || || Sbjct 27783598 ATATCTTCGCCATGTATACC 27783579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552601445920