Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4 517 9e-142
seq2 334 6e-87
>seq4
Length=23952536
Score = 517 bits (572), Expect = 9e-142
Identities = 620/839 (74%), Gaps = 5/839 (1%)
Strand=Plus/Minus
Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165
|||| || || || |||||||| ||||| ||||| ||| | || |||||| ||| ||||
Sbjct 3358987 AGGCTGAGGCCTCATTCTGGACTGTGGAAGAGGTGGATCTCTCTAAAGACTTGACCGACT 3358928
Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225
||| |||||| | || | || || || |||||| | || ||||||||||
Sbjct 3358927 GGGCACGTTTAACTGATAACGAGCGTCACTTTATCTCCCATGTGCTCGCCTTCTTTGCCG 3358868
Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285
| || || || || || ||||||||| | | || || ||| |||||||||||| |
Sbjct 3358867 CCTCCGATGGCATTGTTAATGAGAATCTTGTCGAGCGCTTCAGCCAGGAGGTGCAAATAA 3358808
Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345
| || || ||||||||||| ||||| || || |||||||||||||| |||||||||||||
Sbjct 3358807 CCGAAGCTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGAGATGT 3358748
Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405
|||| || || |||||||| || || ||||| | |||||| || |||||||||
Sbjct 3358747 ACAGCGTGCTGATCGATACATATATTAGGGATCCACAGGAACGGGATTATCTGTTCAATG 3358688
Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465
|||| || || || || || || ||||| || || |||||||| || |||||| |
Sbjct 3358687 CCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGGATTTCAT 3358628
Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525
| |||| | ||||| || || | | || || || | || ||||| | || |
Sbjct 3358627 CGAAGGCGGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGAGGGAATCTTCT 3358568
Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585
| ||||| |||||| | ||||||||| ||||||||||||| || |||||||||||||
Sbjct 3358567 TTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGATGCCCGGTCTGA 3358508
Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645
||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| ||
Sbjct 3358507 CCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGCTGTGATGA 3358448
Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG-GAGCGTGTGGGTGAGATTGTTCGT 61704
| ||| || || ||||| | ||||| | | | ||||| | |||||| | |
Sbjct 3358447 TGTTC---CGGCATTTGGTGCAACGTCC-TAGCCGTGAGCGCATCATTGAGATCATCTCT 3358392
Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764
|| || || || || || || || ||||| || || ||| |||||||| | | || |||
Sbjct 3358391 GATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGCCCGTCAAATTGATTGGC 3358332
Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824
|||||||||| | | ||||| ||||||||||||||||||| || ||||||||||| ||
Sbjct 3358331 ATGAATTGTGCATTGATGTCCGAGTATATTGAATTTGTTGCGGATCGTCTGTTGGTGGAA 3358272
Query 61825 TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884
| ||| | ||||| |||||||| || ||||| || ||||| ||||| |||
Sbjct 3358271 CTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCTTTATGGAGATGATCTCG 3358212
Query 61885 CTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943
|||||||||||||| || || ||||||||| || ||||| ||||||||| |||| ||
Sbjct 3358211 CTGGATGGCAAGACTAACTTCTTCGAGAAAAAAGTTGGCGAATATCAACGTATGGGCGT 3358153
>seq2
Length=27840087
Score = 334 bits (370), Expect = 6e-87
Identities = 1135/1760 (64%), Gaps = 45/1760 (3%)
Strand=Plus/Minus
Query 65081 ACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTG 65140
|| ||||| || || |||||||| || | || || | |||||| ||||||||||||||
Sbjct 27785305 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 27785246
Query 65141 AGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCC 65200
|| || || ||| | ||| ||||| || || | ||||||| ||||||| || || ||
Sbjct 27785245 AGACCCGCTTTCCATGAATAAAAATGGATTGACGTTAATTTTCCATAATTGGGTTCAGCT 27785186
Query 65201 ACATGCATATTCAACGACTGACTCTGATCGATGTAACGA-CCACGATCTGCAGCCATGTC 65259
||||| ||||| || |||||||| ||||| || |||| || | ||| || ||||| |
Sbjct 27785185 ACATGAATATTGAAAGACTGACTTTGATCAATA-AACGCTCCTCTATCAGCCGCCATTTT 27785127
Query 65260 AAT----GATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315
|| ||| ||| || || ||||| || || || |||| ||| | ||
Sbjct 27785126 TATAGTTGATTTGACT----GAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTT 27785071
Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375
| ||||| ||||| | || | ||||||||||| || || || |||| ||||
Sbjct 27785070 TAGGAATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCT 27785011
Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435
|| ||||||| | | || | | || | | ||||| | || | || || |
Sbjct 27785010 CGTCATCCCACAAATCAAGTTCAGTTAAATCACGTAGTAAGTGGTGGTTCACTACCTGAA 27784951
Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495
| ||||| |||| || || | || ||||| || || || || || || |||
Sbjct 27784950 ATTCGCCAGACAAAACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCAT 27784891
Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555
| ||||| | ||||| ||||| ||||| || ||||||||||||| | || || ||||
Sbjct 27784890 TATTGCCCAATATTTGCGCAGTGGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTC 27784831
Query 65556 GCAATCCGTTCA----TTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611
| |||| | | || || | | |||| || | ||| | | | |
Sbjct 27784830 TGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTC----CAATCCCAAA--GATCTG 27784777
Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671
| | || | | |||||||| | |||| |||| | || | || ||
Sbjct 27784776 TTGGTGATTTTTTC----CACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCA 27784721
Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731
| || | || || ||| || || || | || |||||||| || | || ||
Sbjct 27784720 ACATAAGTCTCATATGGTCCATCTCTCTGAGCTAATTCACAGCTGGCTTCCAAAGCTCCA 27784661
Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791
| || || || |||||||| | |||| | | | ||| ||| || ||||| ||
Sbjct 27784660 TAGTATATAGTTTCGAAAATCTGCTGATTTAATAAAAATGCTTCACGACTTTCGTA-GGA 27784602
Query 65792 ATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850
||||| ||| | | || | ||| || | ||||| ||||||||||| || ||||| ||
Sbjct 27784601 ATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTG 27784542
Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910
||| ||||| || | | || || || | |||||||||||| ||||| || || |||
Sbjct 27784541 ACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATT 27784482
Query 65911 CAAATTGCGTGTCACCACATGCACGATACGTCGCAAT--TGTTCGAAATCAAAATGTTTA 65968
|| || || || | | | ||| || | | || || ||| || |||
Sbjct 27784481 TAAGTTTTTCGTAACGATTTTA--GTTACTTCTTTAAGCTTTTTAAAGTCATAAGATTTC 27784424
Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028
|| | || ||||||| | ||| || | ||| || | || ||
Sbjct 27784423 ------TCCTGCGT---------CACAAACATATTAAGTGCGATAGACGCCAAATTACAC 27784379
Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088
|||||||| || || || || | ||| || || ||||| ||||||||||||||||| |
Sbjct 27784378 ACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCATTTT 27784319
Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148
|| || || | ||| ||||| || || || | || || | ||||| | | ||||||
Sbjct 27784318 ATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAA 27784259
Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208
||||| || ||||| ||||| || ||||||||||| |||||||| | ||||| |
Sbjct 27784258 GGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAAGAGATTGAGCCTTAATA 27784199
Query 66209 GTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268
|| ||| | || | ||||| || | ||||||| ||| || |||||||
Sbjct 27784198 ACTCGATTCGCTCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAAATCTTCACCC 27784139
Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328
|| || || | || | || || || ||||||||||| | ||||| || ||| |
Sbjct 27784138 CAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAGTCTTCATTAGCT 27784079
Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388
|| ||||| |||||| |||||||||||||| | || | || ||||||||||| ||
Sbjct 27784078 TCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGATCGCGTGCACGA 27784019
Query 66389 TGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCAT 66448
|||||||| | || |||||| | ||| | || || |||| || | |||||
Sbjct 27784018 TGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAA 27783959
Query 66449 GGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGA 66508
|| |||| || || || || | || | ||| || || || || || || || ||
Sbjct 27783958 GGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCAACATAACGC 27783899
Query 66509 GCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568
|||||||| || || || | ||||| ||||| | || || || |||| || || ||
Sbjct 27783898 GCGACATTATTAAATACTCTTAACATTGGTACTAATCCATTTGAAGTGCCGTTCGTTCCA 27783839
Query 66569 TCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTC 66628
|| | || ||| || || ||| ||||||||| || ||||| ||||| |||| |
Sbjct 27783838 CAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAATGCCACCTGCCGAC 27783779
Query 66629 TTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTG 66688
|| || || || || | | |||| || || || ||||| || ||| |
Sbjct 27783778 TTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATTGAATCAGACACT 27783719
Query 66689 ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTG 66748
|| || | || | |||||| | ||| || |||||| || | || || ||
Sbjct 27783718 ATAGTTAAAAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTT 27783659
Query 66749 GGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCA 66808
|||| || || ||||| || | ||| | ||||||| || || | ||| ||||
Sbjct 27783658 GGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCAACTGCAGAATCA 27783599
Query 66809 ATGTTTTCGCCATGAATCCC 66828
|| | ||||||||| || ||
Sbjct 27783598 ATATCTTCGCCATGTATACC 27783579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397552601445920
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