Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 1e-14 seq6 86.0 3e-11 >seq2 Length=27840087 Score = 96.9 bits (106), Expect = 1e-14 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 21715 AGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGT 21774 |||||||||| |||| ||||| ||||| ||||||||||| | || |||||| || Sbjct 545135 AGATGCGTTCGCATATGAACTGGGCAATGCGGTCGCCATGCTTCACCTCGAAGTCCGTGT 545194 Query 21775 CAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGG 21834 | ||||| |||||||| || || || | || || | |||| || || || |||| Sbjct 545195 CCGAGTGATTGAAGAGGACAACACCTAAATTTCCACGATAATCCTCATCCACAACACCGG 545254 Query 21835 CGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTA 21892 |||| || |||| |||||| | |||||| || || | || || ||||| ||||| Sbjct 545255 CGCCCACATCGATAAAGTTCTTTACGGCCAGCCCGGAGCGCGGTGCTACGCGACCGTA 545312 >seq6 Length=26536676 Score = 86.0 bits (94), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||| ||||| ||||||||| ||| ||| || |||| || | Sbjct 3652041 TCTCGTCGCCGTCAAAATCGGCATTGTAGGGCGATGTGCAGGACAAATTCATGCGGAACG 3651982 Query 351162 TGTAGCCCCGCGGGTTGCGCCT-CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTG 351220 || | | ||| | ||| ||| | ||| |||| || | ||||| ||||| Sbjct 3651981 TGGACCA----GGGCAACACCTTCACTCTGTGACCCATCATACTCATCTTGTGCAGCGTC 3651926 Query 351221 GGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280 |||||||||||| ||||| | |||| | || |||||||| | ||||||||||| |||| Sbjct 3651925 GGCTGGCGATTGAAGATGACCAGGTCGTCGTCTCGCAAGTGTCGCTCCACCTTGTAGCCG 3651866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084652242922044