Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1834 111 2e-22 seq1452 87.8 2e-15 >seq1834 Length=718 Score = 111 bits (122), Expect = 2e-22 Identities = 178/250 (71%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 673 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 615 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || | || ||| ||| | || | || | Sbjct 614 GTGTTTTTATTAAACAGTCGCAGCCACCATTTTATTGCAACC--CTTTGGCCCT-CATGG 558 Query 127 CGTTCACCA-----GC-AGT--GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 || |||| || | | ||| |||| |||||||||||||| ||| ||||||| Sbjct 557 AGTAAACCAATCAAGCTACTAGGGCGTACCTTATCCCGAAGTTACGGTACCAATTTGCCG 498 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | |||||| || ||||| | | | |||||||| || ||| | | |||||||||||| Sbjct 497 AGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCCCACCTGTGTCG 438 Query 239 GTTTACGGTA 248 |||| ||||| Sbjct 437 GTTTGCGGTA 428 >seq1452 Length=3931 Score = 87.8 bits (96), Expect = 2e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||| |||||| |||||||||||| | || |||||||| |||||| ||| ||||| | Sbjct 55 GGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCGAGTTCCTTCTCCAGAGTTCTCT 114 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||||| || || ||| | | |||| |||||||||| ||||| Sbjct 115 CAAGCGCCTGAGAATACTCATCTCGCGCACCAGTGTCGGTTTGCGGTA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694362846779