Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3246 152 8e-35 seq3258 147 3e-33 >seq3246 Length=1634 Score = 152 bits (168), Expect = 8e-35 Identities = 176/226 (78%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| |||| ||||| || ||||||| | ||||||||||||| || Sbjct 585 ACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTAGGAATT-CCA 528 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGATTA 120 ||| | | |||| || || | | ||||| | || || || | |||| | || Sbjct 527 AGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGTTT 471 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGCG 179 |||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||||| Sbjct 470 ACCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGTGCA 414 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 413 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 369 >seq3258 Length=1119 Score = 147 bits (162), Expect = 3e-33 Identities = 177/227 (78%), Gaps = 14/227 (6%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| |||| ||||| || ||||||| | ||||||||||||| || Sbjct 665 ACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTAGGAATT-CCA 608 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGATT- 119 ||| | | |||| || || | | |||| | || || || | |||| | || Sbjct 607 AGTTCATGTG-AACAGTTTCAGTTCACAATCCA-AGCATGA--AAGTGGTTCAGCGGTTT 552 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTGC 178 |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||||| Sbjct 551 ACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGTGC 495 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 494 AGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751959932500