Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3202 298 1e-78 seq1358 84.2 6e-14 >seq3202 Length=5929 Score = 298 bits (330), Expect = 1e-78 Identities = 233/278 (84%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || |||| ||||||||| || | |||||||| ||||||| || ||||||| Sbjct 1372 CGCGGGTAACCTGCTTCTTCACAGGTATCTTAATTTCACCGAGTCTCTCGTTGAGACAGT 1431 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1432 GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1491 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| |||||||| | ||||||||| | Sbjct 1492 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCATTTCGGAGCTTCGCCGAA 1551 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||| | || |||||||||| ||||||||||||||||| ||||||||||| ||| Sbjct 1552 GCTAACTCTTCCACTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACGTCATCTT 1611 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 || |||||||| |||||||||| ||||||||||| Sbjct 1612 ACGATTTTGCAGAAACCTGTGTTTTTGATAAACAGTCG 1649 >seq1358 Length=1802 Score = 84.2 bits (92), Expect = 6e-14 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||||||||||||||||||| | |||||||||||| || | | || |||| Sbjct 1063 TACACTGCATCTTCACAGCAAATTCAATTTCACTAAGCTTATTCTTGATACAGTTGTTAT 1122 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||| |||||| | | | ||| | | |||||||||||||||| ||| || Sbjct 1123 GTCGTTACTCCATTCATGCAGGGCCGTATTTAGCGGTCAAGGAATTTCGCTACATTATGA 1182 Query 127 CCGTTATTGTTACGGCCGCCGTTTAC 152 | | | | || |||||| ||||| Sbjct 1183 CTCTCAGT-ATAAAGCCGCCATTTAC 1207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260730656000