Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3216 464 1e-128 seq3202 82.4 1e-13 >seq3216 Length=1099 Score = 464 bits (514), Expect = 1e-128 Identities = 280/295 (95%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| |||||| |||| | | || |||||||||||||||||||||||||||||| Sbjct 676 TACTAAGTTCAATTACTATTGCGACAACATTCATCAGTAGGGTAAAACTAACCTGTCTCA 735 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 736 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 795 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 796 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAATGTCGCTAT 855 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 856 GAGCGCTTGACTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 915 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 CAAATTCCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 970 >seq3202 Length=5929 Score = 82.4 bits (90), Expect = 1e-13 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 817 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 876 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | | || | | ||| || ||||||||||||| | |||| | Sbjct 877 CTTGGGACCAACTACAGCCCCAGGATGC---GATGAGCCGACATCGAGGTGCCAAACCTC 933 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | ||||| |||||||| |||| ||||| Sbjct 934 CCCGTCGATGTGAACTCTTGGGGGAGATAAGCCTGTTATCCCCAGGGTAGCTTTT 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854353008000