Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3202 208 2e-51 >seq3202 Length=5929 Score = 208 bits (230), Expect = 2e-51 Identities = 292/404 (72%), Gaps = 8/404 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||||||| ||||||||| |||||| ||||||| |||| ||| ||| | | | || Sbjct 2023 CGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGTGGACGAGCCTTCCC 2082 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | |||| |||| | | |||| | | ||||| ||| | |||||||||| || | Sbjct 2083 CAGGAAACCTTAGTCATTCGGTGAATCAGATTCTCACTGATTTTTCGCTACTCATACCGG 2142 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCAC--CACTGACACG 178 |||||||||| | |||||| | | | || |||||| | || | | Sbjct 2143 CATTCTCACTTCTAAGCGCTCCACTAGTCCTT-ACGGTCTAGCTTCGTTGCCCTTAGA-- 2199 Query 179 ACGCTCCCCTACCCAACCACACAG--GTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 |||||| |||| | | ||| || | |||||| |||| ||| | ||||||| Sbjct 2200 ACGCTCTCCTATCACGCGACAAAGTCGCGTCCACAGTCTCGGTA-ATATGCTTAGCCCCG 2258 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 || ||| ||||||| |||||||| ||| |||||||||||||||||||||| || | ||| Sbjct 2259 GTAAATTTTCGGCGCAGAATCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGGTGG 2318 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| ||||||| |||| |||||||| |||||||||| ||||| ||||| || Sbjct 2319 CTGCTTCTGAGCCAACATCCTAGTTGTCTATGCAACTCCACCGCCTTTTCCACTTAGCAT 2378 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | |||||| ||||| ||| || ||||||||||| |||| ||| Sbjct 2379 ATATTTAGGGACCTTAACTGGTGGTCTGGGCTGTTCCCCTTTCG 2422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177535232000