Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq3202 208 2e-51 >seq3202 Length=5929 Score = 208 bits (230), Expect = 2e-51 Identities = 318/450 (71%), Gaps = 46/450 (10%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| | ||||| ||||||||| |||||||||| ||| |||||| ||| || ||||| Sbjct 4717 TTTACGAGCCGAAACCCTTCTTCACTCACGCGGCATTGCTCCATCAGACTTTCGTCCATT 4776 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||| || |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||| Sbjct 4777 GTGGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT 4836 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | | | |||||||| | |||| | ||| | |||| |||| ||| ||| | | ||| Sbjct 4837 GGCCGATTACCCTCTCAGGTCGGCTACGCATCATTGCCTTGGTGAGCCTTTATCTCACCA 4896 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTT--- 241 |||||||||| | || | ||||| | || || | || | |||| || |||| Sbjct 4897 ACTAGCTAATGCGCCGCGGATCCATCCAAAAGCGATA-GCACAAAGG---CCATCTTTCA 4952 Query 242 -------------TGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTAT 288 |||| || || ||||| |||||||||| | |||||||| ||||| Sbjct 4953 AACGAAAACCATGTGGT-TTTCGTTGTTATACGGTATTAGCATCTGTTTCCAGGTGTTAT 5011 Query 289 CCCCCTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA- 346 |||| || |||| ||| ||| ||||||||| || ||||||||| | || || Sbjct 5012 CCCCTTCTTCTGGGCAGGTTATCCACGTGTTACTCACCAGTTCGCCACTCG-CTGCTAAC 5070 Query 347 -GCAG-CAAGCT-------GCTTC--CTGTTA-----------CCGTTCGACTTGCATGT 384 || |||| | || || || | | |||||||||||||||| Sbjct 5071 TTAAGTCAAGTTAATGCAAGCATCAACTATCATTAGGCGCAGCTCGTTCGACTTGCATGT 5130 Query 385 GTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||| |||||||||||||| ||||| Sbjct 5131 ATTAGGCATGCCGCCAGCGTTCGTCCTGAG 5160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222332768000