Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3202 325 1e-86 >seq3202 Length=5929 Score = 325 bits (360), Expect = 1e-86 Identities = 378/514 (74%), Gaps = 37/514 (7%) Strand=Plus/Minus Query 22 GAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACC 81 ||| |||| || |||||||||| ||||| |||||||||| | | | |||||||| Sbjct 5061 GAGTGGCGAACTGGTGAGTAACACGTGGATAACCTGCCCAGAAGAAGGGGATAACACCTG 5002 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCT-- 139 |||| |||||||||| |||| | || | | |||||| || | |||| | Sbjct 5001 GAAACAGATGCTAATACCGTATAACA-ACGAAAACCACATGGTTTTCGTTTGAAAGATGG 4943 Query 140 --------CCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGG 191 | || | |||| || ||||| | |||||||||||||| || ||| || Sbjct 4942 CCTTTGTGCTATCGCTTTTGGATGGATCCGCGGCGCATTAGCTAGTTGGTGAGATAAAGG 4883 Query 192 CTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 || |||||||| | ||| ||||||||||||||||||| |||||||||||||| |||||| Sbjct 4882 CTCACCAAGGCAATGATGCGTAGCCGACCTGAGAGGGTAATCGGCCACATTGGGACTGAG 4823 Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 |||||| ||| ||||||||||||||||||||| |||||| || |||||||| | |||| | Sbjct 4822 ACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCACAATGGACGAAAGTC 4763 Query 312 TGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG 371 ||||| ||||| |||||||||| || ||||| ||||| ||||||| |||||| | | Sbjct 4762 TGATGGAGCAATGCCGCGTGAGTGAAGAAGGGTTTCGGCTCGTAAAACTCTGTTGTTAGA 4703 Query 372 GAAGA-------------TAA------------TGACGGTACTTGAGGAGGAAGCCCCGG 406 ||||| ||| ||||||| | | || ||| | ||| Sbjct 4702 GAAGAACGGGCGTGAGAGTAACTGCTCACGTCGCGACGGTATCTAACCAGAAAGTCACGG 4643 Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 ||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||| | Sbjct 4642 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTA-TT 4584 Query 467 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| | ||| ||| ||| | |||||| Sbjct 4583 GGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTC 4550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497517632000