Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3202 405 1e-110 seq4512 78.8 2e-12 >seq3202 Length=5929 Score = 405 bits (448), Expect = 1e-110 Identities = 329/399 (82%), Gaps = 0/399 (0%) Strand=Plus/Minus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 || ||| | |||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 4654 AGAAAGTCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGT 4595 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 ||||| ||| ||||||||||| | ||| ||| ||| | |||||| || ||||||| || Sbjct 4594 CCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGTCTTCTAAGTCTGATGTGAAAGCCTT 4535 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 |||| |||| | | ||| | ||||||| || |||||||| || || ||||| Sbjct 4534 CGGCTTAACCGGAGAAGTGCATCGGAAACTGGGAAACTTGAGTGCAGAAGAGGACAGTGG 4475 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4474 AACTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAGGCGG 4415 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 || || | ||||||||||| ||||||||||||||| |||| |||||||||||||||||| Sbjct 4414 CTGTCTAGTCTGTAACTGACGCTGAGGCTCGAAAGCATGGGTAGCAAACAGGATTAGATA 4355 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 ||||||||||||| |||||||||||||| | |||||||| || | | | | || | | Sbjct 4354 CCCTGGTAGTCCATGCCGTAAACGATGAGTGCTAGGTGTTGGAGGGTTTCCGCCCTTCAG 4295 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||||||| |||||| |||| | ||| ||||||||||| Sbjct 4294 TGCCGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTA 4256 >seq4512 Length=76141 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 ||||||||| ||||| ||| || || | |||||| ||||||||||||| ||||| | Sbjct 52239 TAACTGACATTGAGGGATGAAGGCATGAGTAGCAAAACGGATTAGATACCCGAGTAGTTC 52180 Query 322 ACGCCGTAAACGATGAATACT 342 | || |||||||||||||||| Sbjct 52179 ATGCAGTAAACGATGAATACT 52159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203133824000