Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3258 158 2e-36 seq3246 158 2e-36 >seq3258 Length=1119 Score = 158 bits (174), Expect = 2e-36 Identities = 171/222 (77%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 449 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 507 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 508 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 565 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| |||| | | | || || | || | | | ||| ||||| ||||||||| Sbjct 566 CTTTCATGCT-TGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCTAGTAAG 623 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 | | ||||| | | ||| ||||||||||||||||||||||| Sbjct 624 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGT 665 >seq3246 Length=1634 Score = 158 bits (174), Expect = 2e-36 Identities = 171/222 (77%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 369 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 427 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| ||||| | | || | Sbjct 428 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTC-CGGTAAACCGCTGAACCA 484 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| ||||||||| Sbjct 485 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCTAGTAAG 543 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 | | ||||| | | ||| ||||||||||||||||||||||| Sbjct 544 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGT 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947147904000