Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5173 226 9e-57 seq4231 118 3e-24 seq651 109 2e-21 >seq5173 Length=2730 Score = 226 bits (250), Expect = 9e-57 Identities = 140/149 (94%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 |||||| || |||||||||||||||||| | || |||||||||||||||||||||||||| Sbjct 2730 TCTAGATTTTCCACGGTTATCCATGTAGAACGGAACTATCAAATAAACGATAACTGATTT 2671 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 |||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 2670 AATGAGCCATTCGCAGTTTCACCGTAT--AATGCTTATACTTAGACATGCATGGCTTAAT 2613 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| Sbjct 2612 CTTTGAGACAAGCATATGACTACTGGCAG 2584 >seq4231 Length=40895 Score = 118 bits (130), Expect = 3e-24 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 ||||||||||||||||||| | ||||||| |||||||||| ||| |||||| || || Sbjct 9519 CCCTCTCCGGAATCGAACCTTGATTCCCCTTTACCCGTTGCAACCGTGGTAGTCCTAGAT 9460 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCAT 249 |||||||| ||||||||||||||||| | |||| || | ||| ||| |||| |||| Sbjct 9459 ACTACCATCTAAAGTTGATAGGGCAGACTTATGAAAGATCTGTCGTCGGTACAAGACCAT 9400 Query 250 GCGAT 254 |||| Sbjct 9399 ACGAT 9395 >seq651 Length=26871 Score = 109 bits (120), Expect = 2e-21 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 ||||||||||||||||||| | ||||||| |||||||||| || |||||| | || Sbjct 6301 CCCTCTCCGGAATCGAACCTTGATTCCCCTTTACCCGTTGCCGCCGTGGTAGTCTTAGAT 6360 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCAT 249 |||||||| ||||||||||||||||| | |||| || | ||| ||| |||| |||| Sbjct 6361 ACTACCATCTAAAGTTGATAGGGCAGACTTATGAAAGATCTGTCGTCGGTACAAGACCAT 6420 Query 250 GCGAT 254 |||| Sbjct 6421 ACGAT 6425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510316928000