Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5218 495 3e-135 seq5403 372 2e-98 >seq5218 Length=3038582 Score = 495 bits (548), Expect = 3e-135 Identities = 1229/1853 (66%), Gaps = 33/1853 (2%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| || ||||| || || || ||||| | ||| || | | |||||||| ||||| Sbjct 2802890 TCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCCGGTT 2802831 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || ||||| ||| | |||||||| || |||| | ||| |||| || ||||| Sbjct 2802830 TTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGGCTCT 2802771 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCAT 65256 |||||||| ||||| || ||||| |||||||| || |||| ||| |||||||| ||||| Sbjct 2802770 GCCACATGGATATTGAAGGACTGGCTCTGATCTATA-AACGCACCGCGATCTGCGGCCAT 2802712 Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | ||| | || | | || || ||||| || || ||||| ||| || |||| Sbjct 2802711 TTTAATTGTT-GATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGGACCTTTT 2802653 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 |||||| ||||| | || | || || | | | || || |||| ||| Sbjct 2802652 GTGGAATTGATTCAATATTTTGAATGGATCCCCTGCTGGATATGATCTGATTCTTCATGT 2802593 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||||||| ||| || | | || | ||| ||| | |||| ||||||| Sbjct 2802592 CATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCACTTGGA 2802533 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 ||||||| || ||||| || | ||| || || | || ||| || |||||||| Sbjct 2802532 ACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGGATTCGT 2802473 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 | || || | |||||| ||||| ||||| || ||||| ||||| ||||| | ||||||| Sbjct 2802472 TATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGTTTC 2802413 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGT 65615 | ||| | ||| ||| | || | | ||||| ||| | | | | ||| Sbjct 2802412 TAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAA--GATCTGTCGG 2802355 Query 65616 CGAC--ATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 || |||| ||||| || | ||||| |||| ||||| |||| || Sbjct 2802354 CGTTTTATCC------CACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTC 2802301 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733 || | || || || ||| | ||| |||| || |||| || || || |||| Sbjct 2802300 ATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAA 2802241 Query 65734 ATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCAT 65793 |||||||| || || || || | || | | ||||| ||||| ||||| || Sbjct 2802240 GTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCGTAGGGATA 2802181 Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 || ||| || | | | ||| |||||||| ||||| || || || || |||||||| | Sbjct 2802180 ACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCT 2802121 Query 65854 CAAATTGGAACGTCTCG-CCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912 |||||||| | ||| | |||| || | ||||| | || ||||| || || ||| | Sbjct 2802120 TAAATTGGA-CTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGA 2802062 Query 65913 AATTGCGTGTCACCACATGCACGATACGTCGCAAT-TGTTCGAAATCAAAATGTTTAGGA 65971 || | | |||| | || | | || | || ||| ||| | ||||| Sbjct 2802061 GGTTTCTGGCCACCGTCTTTGTGAC-CTCCTTAAGCTTTTTGAAGTCATA-TGTTTTC-- 2802006 Query 65972 CGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACA 66031 || || || ||||||| || || || | ||||| | ||||| || Sbjct 2802005 ---TCTGGCGT---------CACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACT 2801958 Query 66032 GCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATG 66091 || |||||||| || | | |||||||||||||| ||||||||||||||||| ||| Sbjct 2801957 GCAATCTCGTCGGGCGAAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATG 2801898 Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGA 66151 ||||||| |||||||| || ||||| || ||||| || |||||| | | |||||| ||| Sbjct 2801897 GTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGA 2801838 Query 66152 GTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA 66211 |||| ||||| ||||| ||||||||||||||| ||| | | |||| || || || Sbjct 2801837 TTGCCAGTCTCCACTTGCGACTCAATGATGGCGAACCACAAGGACTGTGCTTTTACAGTT 2801778 Query 66212 CGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT 66271 || || | || | ||||||| | | || || | ||| || || ||||| Sbjct 2801777 CGGTTTGCGCGTCCCTCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCAC 2801718 Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331 || || || | || || ||||| ||||| | |||||||| || ||| || Sbjct 2801717 ACATCATGAAGTCCAGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCC 2801658 Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 || || ||| || ||||| |||||||| ||||| ||||| | ||| || ||||| ||| Sbjct 2801657 ACTCGTTTCATGAAGAGATCTGGTATCCACAGGGCATAGAACAAATCACGGGCTCGATGC 2801598 Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451 || || |||| ||| || | ||| || |||||||| | || | |||||| || Sbjct 2801597 TCTTCCTTGCCAGTATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGC 2801538 Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 || || || ||||| || | ||| || ||||| ||||| || || || || || || Sbjct 2801537 TCTAGATAAATGGCAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCC 2801478 Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571 || ||||| ||||| | || ||| || || || || || || |||| ||||| ||| Sbjct 2801477 ACGTTGTTAAAGACTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAA 2801418 Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTC 66631 |||| | || ||| || ||| || ||||| |||||||||||||| || | ||| Sbjct 2801417 ATGGAAGTACCCTTTGCACGAATACAATGGACATTAAGACCAATACCACCTGCAGACTTG 2801358 Query 66632 GAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATG 66691 ||||| || || | | |||| | ||| || || ||||| ||||| | ||| Sbjct 2801357 GAGATCATGGCGCATTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATG 2801298 Query 66692 GTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGT 66751 |||||||| | || || || ||||| |||||| || | || || || || Sbjct 2801297 GTCAGGAGAAAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGC 2801238 Query 66752 GTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATG 66811 | ||||||||| || ||| | || | | ||||||||||| | | ||||||| ||| Sbjct 2801237 GAAGCGTGCGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATG 2801178 Query 66812 TTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGC 66871 | ||| ||||| || |||| ||| ||||| || | || || || || ||| | | Sbjct 2801177 TCTTCTCCATGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATT 2801118 Query 66872 CGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | | ||||| | | | ||| || || ||||| ||||||| |||||||| Sbjct 2801117 TTACCATTGATTTTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTA 2801065 >seq5403 Length=2915140 Score = 372 bits (412), Expect = 2e-98 Identities = 601/857 (70%), Gaps = 13/857 (2%) Strand=Plus/Plus Query 61104 AAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGA 61163 |||||| ||||| || |||||||| || |||||||| || | ||||| || | | || Sbjct 121514 AAAGGCTGAAGCCTCTTTCTGGACAGTCGAGGAGGTGGACCTTTCCAAGGATCTTACCGA 121573 Query 61164 CTGGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||| | || ||| || || ||||| || ||||| || ||| |||| ||||||| Sbjct 121574 TTGGCACCGCCTTAAGGA-CGATGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTG 121632 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 | ||||| || || || || || |||||| | | || || ||| |||||||| || | Sbjct 121633 CTGCTTCCGATGGAATTGTAAACGAGAATCTGGTTGAGCGCTTCAGTCAGGAGGTTCAGG 121692 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 | ||||||| || ||||| || |||||||| || |||||||| || || |||||||||| Sbjct 121693 TCACGGAGGCTCGCTGTTTTTATGGCTTCCAAATCGCCATGGAAAACGTACACTCGGAGA 121752 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCA 61402 |||||||||| |||||||| || ||||| || || | | || || |||||| Sbjct 121753 TGTACAGTGTACTCATCGACACTTACATTAGAGATCCCCACCAGCGCGAGTACCTGTTCA 121812 Query 61403 ATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCA 61462 ||||||| || ||||| |||||||||||||| || || |||||||| | |||||| Sbjct 121813 ATGCCATTGAAACGATGCCGGCGGTGAAGCGCAAGGCCGATTGGGCGCTGGCCTGGATCT 121872 Query 61463 CCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 || | | || | ||||| || || | | || ||||| | || ||||| | | Sbjct 121873 CCTCAAAGTCTGCCAACTTTGGAGAGCGCATCATCGCTTTTGCTGCCGTAGAGGGAATCT 121932 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | ||||| || || ||| | ||||| ||| ||||||| || || || ||||| |||| Sbjct 121933 TCTTCAGCGGTAGCTTCGCCTCCATCTTCTGGCTGAAGAAGCGAGGTCTGATGCCTGGTC 121992 Query 61583 TGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTT 61642 |||||||| ||| ||| |||| || | ||||| ||| | || || || |||||||| Sbjct 121993 TGACCTTCTCCAACGAGCTGATCTCCAGGGACGAAGGCCTTCACTGCGACTTTGCTGTGC 122052 Query 61643 TGCTATTCAAACGCTATCTGGT---GAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTG 61699 | | ||| | | |||| || ||| | ||||| |||||| | ||||| Sbjct 122053 TAATGTTCCAGC---ATCTCGTCCAGAAGC-CACGTCG--GGAGCGCATCATCGAGATCA 122106 Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 | || || || || || |||||||| || || || ||||| |||||||| | | Sbjct 122107 TCCGCGACGCTGTGGACATTGAACAGGAGTTCCTCACAGACGCCTTGCCCGTGAATTTGA 122166 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819 |||||||||| || | | ||||| || || || ||||| ||||| ||||| || ||| Sbjct 122167 TCGGCATGAACTGCGACTTGATGTCACAATACATCGAATTCGTTGCGGACCGGCTACTGG 122226 Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879 | || |||| | | ||||| || || || || || || |||||||||| |||| Sbjct 122227 TAGAGCTGGGCGTCGGGAAAATCTACAACACCAAGAATCCTTTCAATTTCATGGAGATGA 122286 Query 61880 TTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGG 61939 | |||||||| || ||||| || || || || || || || || || || ||| ||| Sbjct 122287 TCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGAAGGTGGGAGAGTACCAGCGTATGG 122346 Query 61940 GTGTAGCGA--AATCGA 61954 | || || | |||||| Sbjct 122347 GCGTGGCTACCAATCGA 122363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541350520000