Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq1188 129 2e-25 seq3266 127 7e-25 >seq1188 Length=7565 Score = 129 bits (142), Expect = 2e-25 Identities = 333/502 (66%), Gaps = 4/502 (1%) Strand=Plus/Plus Query 28635 CAAGAAAAACTCGAAGTCCACGCTGGCCGCAGGGATCATGATGACTGCACTGTTACTGAA 28694 |||||||||| | ||| ||| | || || || | ||| |||| | ||| | ||||| Sbjct 263 CAAGAAAAACACCAAGAGCACCATTGCGGCGGGCGTGATGTTGACGGTTCTGATCCTGAA 322 Query 28695 CTGGCGGCAGGCGGCGGGCTACACGATTCTGGCCCCGACAGTGGAGGTGGCAGCCCACGC 28754 ||||||||| |||| | | ||| |||| || || ||| | |||| | |||| Sbjct 323 CTGGCGGCAATCGGCCGAGTTTCTGATCTTGGCACCAACCAAGGAAGCCGCAGACAACGC 382 Query 28755 CTTCAACCCTGCCAGGGATATGGTACGACGG-GACGATGATCTGGATGACCTCTGTCAGG 28813 |||||| ||||| |||| ||| | | | | ||| ||| ||||||| ||| | || | Sbjct 383 CTTCAAGCCTGCGCGGGACATGAT-CAAGGCAGACCCTGAACTGGATGCCCTGTTCCATG 441 Query 28814 TGCAGACACATATCCGGACCATCACCCACCGGGTGACAGACACCACCCTGAAGGTGGTGG 28873 ||||| | | ||| | | | || ||||| | || | | || || ||||| |||| Sbjct 442 TGCAGGATTACACCCGCATCGTGACGCACCGTGAAACCGGGGCGACACTCAAGGTTGTGG 501 Query 28874 CAGCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGTACGCTGATTGATGAGCTGT 28933 | || ||| | | || || | || || || | ||| | |||||| ||| Sbjct 502 CGGCAGATGGATCTTCTGTTGTGGGCAAGAAAGCCACCGGCATTCTGGTGGATGAGTTGT 561 Query 28934 GGCTGTTTGGCAAGCAGTACAAGGCGGAGGACATGTTACGTGAAGCCATCGGTGGCCTTG 28993 || ||| |||||| || || ||| ||| ||||| | ||||| | || ||| | | Sbjct 562 GGGAGTTCGGCAAGAAGCCCACGGCTGAGAACATGCTCATGGAAGCTACTGGCGGCATCG 621 Query 28994 CCTCCCGCCCGGAAGGGTTTGTGGTGTATACGACCACCCAGTCGAATGAACCTCCCGCCG 29053 | ||||| |||||||| || | | || || ||| |||||| ||||| || |||| Sbjct 622 CTTCCCGTCCGGAAGGCTTCATCATTTACCTGAGCACGCAGTCGGATGAAGAGCCTGCCG 681 Query 29054 GGGTGTTCAGACAGAAA-CTGCAGTACGCCCGGGATGTGCGCGACGGCAAAATTCATGAT 29112 | ||||||| | || ||| | || || || | ||||| |||||||| || || Sbjct 682 GTGTGTTCA-AGAGCCGTCTGGAATATGCGCGCGGCGTGCGGGACGGCAAGATCAATTCG 740 Query 29113 CCGCACTTTCTGCCGGTGATCT 29134 || | ||||||||||| |||| Sbjct 741 CCCCGTTTTCTGCCGGTTATCT 762 Score = 82.4 bits (90), Expect = 3e-11 Identities = 165/242 (68%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 29758 GTGGGGATAAGCCAGGGCTGGAAACTGGGCGGGGCCATTAAAACCACCGAGCGCAAACTG 29817 || ||||| ||||||||||||||| || ||||||||| || || ||||| || ||| Sbjct 1313 GTCGGGATCAGCCAGGGCTGGAAAATGACCGGGGCCATCAAGACGCTGGAGCGTAAGCTG 1372 Query 29818 GCTGAAGGGGTGCTGGTGCATGGTGACCAGCCCCTGATGGCCTGGTGTGTCGGCAATGCC 29877 || || || | | ||||| | | || | ||||| ||| || |||||||| Sbjct 1373 GCAGATGGCACGTTCTCCCATGGGGCGCGTCCGATCATGGCTTGGGCGGTTGGCAATGCA 1432 Query 29878 CGGGTGGAGCCTAAAGGTAACGCCATTCTTATCACCAAACAG--GCCAGTGGACGGGGA- 29934 || | || | || || ||| || |||||||| ||| | || | ||| | Sbjct 1433 AAGGCGCAGGCCAAGGGCAACAATATCGAAATCACCAAGCAGATGGCA---GGCGGTAAG 1489 Query 29935 AAAATTGACCCGCTGATGGCGCTGTTCAATGCGGTCTCCCTGATGTCCCTTAACCCGGAA 29994 ||||| |||||||||||||||||||| |||| || || ||| || |||||||| Sbjct 1490 AAAATCGACCCGCTGATGGCGCTGTTTGATGCCGTGGCCTGTATGAGCCGAAACCCGGAG 1549 Query 29995 CC 29996 || Sbjct 1550 CC 1551 >seq3266 Length=1575 Score = 127 bits (140), Expect = 7e-25 Identities = 339/510 (66%), Gaps = 10/510 (2%) Strand=Plus/Plus Query 28635 CAAGAAAAACTCGAAGTCCACGCTGGCCGCAGGGATCATGATGACTGCACTGTTACTGAA 28694 |||||| || | ||| ||| | || || || | ||| |||| | ||| | ||||| Sbjct 323 CAAGAAGAATACCAAGAGCACCATTGCTGCTGGCGTGATGTTGACGGTGCTGATCCTGAA 382 Query 28695 CTGGCGGCAGGCGGCGGGCTACACGATTCTGGCCCCGACAGTGGAGGTGGCAGCCCACGC 28754 |||||| || | || | | | ||| ||||| ||||| ||| | ||| ||| | || Sbjct 383 CTGGCGACAATCTGCCGAGTTCCTGATCCTGGCACCGACCAAGGAAGCGGCGGCCAATGC 442 Query 28755 CTTCAACCCTGCCAGGGATATGGTACGACGGGACGAT---GATCTGGATGACCTCTGTCA 28811 |||||| || || |||| ||||| | || | ||| || |||||| ||| | || Sbjct 443 CTTCAAGCCAGCGCGGGACATGGTC--AAGGCA-GATCCGGAATTGGATGCCCTGTTCCA 499 Query 28812 GGTGCAGACACATATCCGGACCATCACCCACCGGGTGACAGACACCACCCTGAAGGTGGT 28871 |||||| | | || | | || ||||| | || | | | || || ||||| || Sbjct 500 TGTGCAGGATTACACTCGCGTCGTGACGCACCGCGAAACCGGCGCAACACTCAAGGTTGT 559 Query 28872 GGCAGCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGTACGCTGATTGATGAGCT 28931 ||| || ||| | | || || | || || || | ||| | |||||||| Sbjct 560 GGCTGCGGATGGCTCTTCTGTTGTGGGCAAGAAAGCCACTGGCATTCTGGTAGATGAGCT 619 Query 28932 GTGGCTGTTTGGCAAGCAGTACAAGGCGGAGGACATGTTACGTGAAGCCATC-GGTGGCC 28990 ||| ||| |||||| || || |||||| ||||| | | || || || | |||||| Sbjct 620 ATGGGAGTTCGGCAAGAAGCCCATGGCGGAAAACATGCT-CATGGAGGCAACAGGTGGCA 678 Query 28991 TTGCCTCCCGCCCGGAAGGGTTTGTGGTGTATACGACCACCCAGTCGAATGAACCTCCCG 29050 |||| |||||||||||||| || | | ||| || ||| |||||| ||||| || | Sbjct 679 TTGCATCCCGCCCGGAAGGCTTCATTATTTATCTGAGCACGCAGTCGGATGAAGAGCCTG 738 Query 29051 CCGGGGTGTTCAGACAG-AAACTGCAGTACGCCCGGGATGTGCGCGACGGCAAAATTCAT 29109 |||| ||||||| | || ||| | || || || | ||||| ||||| || || || Sbjct 739 CCGGTGTGTTCA-AGAGCCGTCTGGAATATGCGCGTGGCGTGCGGGACGGTAAGATCAAT 797 Query 29110 GATCCGCACTTTCTGCCGGTGATCTTTGAA 29139 || | ||||||||||| |||| |||| Sbjct 798 TCACCCCGTTTTCTGCCGGTTATCTATGAA 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175534134678000