Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq3603 297 6e-76 seq1112 104 7e-18 seq1146 95.1 4e-15 >seq3603 Length=11899 Score = 297 bits (328), Expect = 6e-76 Identities = 410/567 (72%), Gaps = 14/567 (2%) Strand=Plus/Minus Query 1669 ATGTCAATTATTACTGATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACA 1728 |||||||||||| ||||| | || || || ||||| | || ||||| ||||| ||||| Sbjct 590 ATGTCAATTATTTCTGATATTTATGCTCGCGAAGTGTTGGATTCACGTGGTAATCCAACT 531 Query 1729 CTTGAAGTAGAAGTTTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGA 1788 |||||| ||||||||||| ||| |||||| | || || || || || || ||||| Sbjct 530 GTTGAAGCTGAAGTTTACACAGAAGACGGTGCAATGGGCCGTGGAATCGTCCCATCAGGT 471 Query 1789 GCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGT 1848 || ||||| |||||||||||||| || ||||||||||| || |||||| | | || | Sbjct 470 GCCTCAACCGGTGAACACGAAGCTGTTGAACTTCGTGACGGAGACAAAAATAGATATA-T 412 Query 1849 GGTCT----TGGTACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACAT 1904 || | || |||| ||||| ||| ||||| |||||| | ||||| | | || Sbjct 411 GGGCAAAGGTGTTACT---AAAGCTGTTAGCAACGTTAACAACATCATTGCAAAAAAAAT 355 Query 1905 CATCGGATTCGACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGG 1964 | | || || || ||| ||||||| ||||||||||| || |||||| ||||| || Sbjct 354 CGTTGGTTTTGATGTAACTGATCAATTAGGTATTGACCAAGCTATGATCAAGCTTGATGG 295 Query 1965 TACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGG-TGTGTCTATCGCTGTAG 2023 |||||| ||||||| ||| | ||||| ||||| || |||| ||| || || |||| | Sbjct 294 TACTCCTAACAAAGCTAAGTTAGGTGCTAACGCAAT-CTTGTCTGTTTCAATTGCTGCTG 236 Query 2024 CACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACA 2083 | | || || || ||| | |||| |||||| | || | |||| | || || ||| | Sbjct 235 CTAGAGCCGCAGCCGACGAACTTGGTGTTCCATTGTATAACTACTTAGGTGGTTTCGATG 176 Query 2084 CTAAAGTTCTTCCAACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTC 2143 | | |||||||||||||||||||||||| | ||||| |||||| || | | | Sbjct 175 CACATGTTCTTCCAACTCCAATGATGAACGTTATCAATGGTGGTAAGCATGCTAA--CAA 118 Query 2144 CAA--TCGCTTTCCAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGC 2201 ||| | | |||||||||||| |||||| | || ||||||| |||||| | |||||| Sbjct 117 CAAGGTTGATTTCCAAGAATTCATGATTATGCCAATTGGTGCAAAAACATTTAGAGAAGC 58 Query 2202 GCTTCGTTGGGGTGCTGAAATCTTCCA 2228 |||| ||| | |||| ||||| Sbjct 57 CGTTCGGATGGGATCAGAAACTTTCCA 31 >seq1112 Length=42414 Score = 104 bits (114), Expect = 7e-18 Identities = 486/750 (65%), Gaps = 44/750 (6%) Strand=Plus/Minus Query 45146 CCGTAGTGGTCACCATACATAACAATAATCGAATTATCATAAAGGCCAGTTTCCTTAAGG 45205 || ||||| || ||||||| ||| || | ||||| | | ||||| | | |||||| Sbjct 36847 CCATAGTGATCTCCATACAGAACGATGACGGAATTCTTAAGGAGGCCGGCCTTATTAAGG 36788 Query 45206 TAATCAAAGAAGTCTT----TGATTGCAGAGTCAAGATAGTTGGCTGTTGCAAAATACCC 45261 || | | || || | |||||| ||| ||||||| || ||| |||| || Sbjct 36787 TAGGCGTACAATTCCTGAACTGATTG----GTCCAGATAGTGAGCCGTTACAAAGTAGTT 36732 Query 45262 GTTAACTGTTTCGTCTTTTGTGTCAGCGAGTGGGAAACCTTGT-TCGTTTTTGTCGCCTG 45320 ||| || | || ||| || ||||| | ||| ||| | || |||| || || Sbjct 36731 GTTGACGGCTTGGTCATTGGTGTCTG-GAGCCTTAAAGTCAGAATCCTTTTGATC--CTC 36675 Query 45321 ACAGGGAAG-TG-TATGGGTAGTGGTTAGATACGGTTAGGTATTTAACATAGAAAGGCTG 45378 | | ||| || || ||| |||| |||| || || | ||| ||| | ||||| || || Sbjct 36674 ATCGTCAAGCTGATAAGGGAAGTGATTAGTAACTGTAATGTACTTAGCGTAGAACGGTTG 36615 Query 45379 TTGCATTTGTTCCAGATATTTGATGGAATCTGAAAACATGTACTTATCATTAAGACCGTA 45438 ||||| |||| || || || | |||||| ||| | ||||||| || | || || Sbjct 36614 TTGCAAGTGTTGGAGGTACTTCGTTGAATCTCTAAAGAGTAACTTATCCTTTAATCCATA 36555 Query 45439 TTGGAAGGAGTTTTCATCGGTTTTCTCAGTGAAAGCTGATGAGTCAAAGAAGTAGTTATA 45498 | | ||| || ||| ||| | ||| | | ||| | || |||||||| | || Sbjct 36554 TCCGGTGGACTTATCACCGGAAGTGTCATAGTA-GCTC--GCATCGAAGAAGTAATCGTA 36498 Query 45499 ACCCCAATGTTTATAGGTATTATTGCGGTTCCAGAAGGATCCAGTGTTTCCGTGGAAAAC 45558 |||| | | ||||| || ||||| |||||||||||| || |||||| ||||| || Sbjct 36497 ACCCAAGTTCTTATACGTGTTATTCCGGTTCCAGAAGCTAGCAACGTTTCCATGGAAGAC 36438 Query 45559 AGCTGAAGTATAGCCACTCGTTTGAGCTAGGATAGATGGTGCAGC--GTAAGCTGTATTG 45616 || || || || || | ||||| | || || | || || | | ||| || ||| Sbjct 36437 GGCGGACGTGTATCC---CTTTTGACCCAGAATGGCAGGAGCCCCCTGGAAG--GTGTTG 36383 Query 45617 GTACCACCGTAGTTTACCATATATG--ACCCTGTACTTAGTCCGAAGAGTGAT-GTTTCC 45673 || || |||| | | | | |||||| || ||| || || | ||||| Sbjct 36382 TCACTTCC-AAGTTGGGCGAAAAGGGATCCCTGT-GGTAATCCATAG-GTACTGGTTTCG 36326 Query 45674 ATCAAGGTTTCAGCATCAGAAGTTTTTCCTGATTTAACTTGGTGGAAGAAGTT-TGAAAA 45732 | || |||| ||||| ||||| |||||| | ||||| ||||||||||| | ||| Sbjct 36325 AGCATATTTTCGGCATCGGAAGTCTTTCCTTGTCCTACTTGATGGAAGAAGTTATCAAAT 36266 Query 45733 GGCTAGGGTTTCATTTGAGTGGTAAATGGAATTAAGGAATGGTGTTACTTCATAAGACTG 45792 | || |||| || ||| || | |||||||| || |||||||| ||| Sbjct 36265 GAATA-GGTTGACTTACTGTGATACAGCTTGTTAAGGAAAGGAGTTACTTC------CTG 36213 Query 45793 ACCATCTACTTGGAGCTTGTAATCAATAAGAAACTGTTGGAAACTCTCCAAGTGAATAAC 45852 || | || || || | |||||| |||||||| ||||| || | ||||| | Sbjct 36212 TCCGT-TAATT-----TTTTTATCAATTGTGAACTGTTGAAAACTTTCTAGATGAATGAT 36159 Query 45853 GATAACGTTTCTTCCTTTAGCAATTCCGTA 45882 ||| |||||| | || ||||| || || || Sbjct 36158 GATGACGTTTTTACCCTTAGCCATCCCATA 36129 >seq1146 Length=34662 Score = 95.1 bits (104), Expect = 4e-15 Identities = 289/440 (66%), Gaps = 10/440 (2%) Strand=Plus/Minus Query 1692 CGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGA 1751 |||||||||| | || ||| ||||| |||||||| |||||||||| || | | Sbjct 22475 CGCACGTGAAATTCTGGACAGCCGCGGCAACCCAACGGTTGAAGTAGATGTGGAGCTGGC 22416 Query 1752 ATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGC 1811 ||| || || || || | |||||||| || || ||||| |||| || ||||| Sbjct 22415 ATCCGGCGCCAGAGGGCGTGCGGCTGTTCCTTCTGGTGCCTCAACCGGTGCGCATGAAGC 22356 Query 1812 AGTAGAACTTCGTGATGGTGA--CAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCA 1869 |||||||| ||||||||||| | ||| || | ||||| ||| || || || Sbjct 22355 CGTAGAACTGCGTGATGGTGACCCCAAG--CGGTTTGGTGGCAAGGGTGTTCTCAAGGCT 22298 Query 1870 GTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTA-CG--TGAT 1926 ||||| ||| | | |||| | | ||| ||| | || | | || | || ||| Sbjct 22297 GTTGAGAACATTGAAAACG-AAATCCTGCCCACGCTACAGGGT--GCCGAATCGGCAGAT 22241 Query 1927 CAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTT 1986 || | ||| ||| ||| ||||| | ||| || || || || |||||| | | Sbjct 22240 CAGATTGATATCGACAACGCCATGATTGATCTGGATGGCACACCCAACAAAAGCCGTATG 22181 Query 1987 GGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTT 2046 ||||| ||||| ||||| ||||| ||| | || | || || | || | | | || Sbjct 22180 GGTGCGAACGCCATTCTGGGTGTATCTCTTGCCATTGCCAAAGCCACGGCAGCCGAACTG 22121 Query 2047 GAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATG 2106 | ||||| || ||| ||||| |||| || | | | ||||| || || ||| Sbjct 22120 CATGTTCCGCTGTACCGCTACATTGGTGGCGTGTTTGCCCATGTTCTGCCCGTGCCGATG 22061 Query 2107 ATGAACATCATCAACGGTGG 2126 |||||||| |||||||||| Sbjct 22060 ATGAACATTGTCAACGGTGG 22041 Score = 89.7 bits (98), Expect = 2e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 || |||||||| || ||||| | || ||||| |||| || | ||||||| | Sbjct 21490 AAGGTTAACCAGATTGGTACGCTTACGGAAACGCTTGAAGCCGTGCAAATGGCCCAGCGC 21431 Query 2755 GCTGGATACACAGCAGTAGTATCA--CACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 ||||| ||||| || || ||| | || ||||| |||||||| |||||||| || || | Sbjct 21430 GCTGGTTACACTGCGGT--TATGAGCCATCGTTCTGGTGAAACGGAAGATTCCACCATTG 21373 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 | ||| | || || || || || || || || || || || || | || ||| ||| Sbjct 21372 CGGATCTGGCTGTGGCTACAAATTGCGGACAGATCAAAACCGGCTCTCTTTCCCGTTCTG 21313 Query 2873 ACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 | || | || ||||||||||| | ||||||| || Sbjct 21312 ATCGGACAGCCAAATACAACCAGCTCATTCGTATTGA 21276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156028208742000