Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 381 5e-101 >seq2 Length=22510139 Score = 381 bits (422), Expect = 5e-101 Identities = 599/845 (71%), Gaps = 17/845 (2%) Strand=Plus/Plus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| ||||| || || ||||| ||||| || || ||| |||| || ||||||| ||||| Sbjct 3318479 AGGCCGAAGCCTCATTTTGGACTGTGGAAGAAGTGGATCTGTCTAAGGACATGACTGACT 3318538 Query 61166 GGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 |||| ||| ||| || | ||| | || || ||| |||||||||||| || || || Sbjct 3318539 GGGAACGTCTTACAGA-CAATGAGCGTCACTTTATTTCACATGTGTTGGCATTTTTCGCA 3318597 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || || || || || ||||||||||| | | || || || || || ||||| | Sbjct 3318598 GCCTCTGATGGCATTGTCAATGAGAACCTGGTTGAGCGCTTTAGTCAAGAAGTGCAGATA 3318657 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 | ||||| || || || || || ||||||||||| |||||||||||||||||||||||| Sbjct 3318658 ACAGAGGCACGCTGCTTTTATGGATTCCAGATTGCGATGGAGAATGTCCACTCGGAGATG 3318717 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT-TGTTCAA 61403 || ||||| ||||| |||||||| || | || | | |||| || || ||||||| Sbjct 3318718 TATAGTGTGCTCATTGATACGTATGTCCGTGATCCCCAACAGCGTG-ACTATCTGTTCAA 3318776 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCAC 61463 ||| || || || || ||||| |||||||| || || || ||||| || ||||| | Sbjct 3318777 TGCAATTGAAACAATGCCGGCTGTGAAGCGCAAGGCTGACTGGGCATTATCATGGATATC 3318836 Query 61464 CAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521 | | ||| | || | ||||| || || | | || || || | || ||||| | Sbjct 3318837 C--TCCAAGGCTGCCAACTTTGGCGAGCGGATTATTGCCTTCGCCGCCGTTGAGGGCATT 3318894 Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || || || || || ||| | || || ||| | ||||| ||||| || ||||| || Sbjct 3318895 TTCTTTAGCGGCAGCTTCGCCTCCATTTTCTGGCTAAAGAAGCGTGGCCTCATGCCTGGC 3318954 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641 |||||||| ||||||| | || || ||||| |||||| |||| ||||| ||||| || Sbjct 3318955 TTGACCTTCTCCAATGAGCTAATCTCGCGCGATGAGGGCTTGCACTGTGACTTTGCCGTG 3319014 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCC--GTCGGAGGAGCGTGTGGGTGAGATTG 61699 ||| | ||| ||| || ||||| | ||||| | || ||||| | || ||| Sbjct 3319015 TTGATGTTC---CGCCATTTGGTGCAACGTCCCAGCCG--TGAGCGCATCATTGCAATTA 3319069 Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCAC-TC 61758 || || || || | || |||||||| || || || || ||| |||| || | || | Sbjct 3319070 TTGAGGATGCTGTCAAGATTGAACAGGAGTTCCTCACAGATGCTCTGCCAGT-TAACTTG 3319128 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 || |||||||| || | || ||||| |||| ||||| || || || || || ||| || Sbjct 3319129 ATTGGCATGAACTGCGCTCTGATGTCAGAGTACATTGAGTTCGTGGCTGATCGCCTGCTG 3319188 Query 61819 GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATG 61878 || || | ||| || ||||||||||| || || ||||| |||||||| ||| Sbjct 3319189 GTGGAGCTTGGTGTGGGAAAAATCTATAATACAAAGAATCCATTGACATTCATGGAAATG 3319248 Query 61879 ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTG 61938 |||||| |||| || || || || || || ||||| || ||||| |||||||| || Sbjct 3319249 ATTTCGTTGGACGGAAAAACTAACTTCTTTGAGAAGAAAGTGGGCGAGTATCAACGCATG 3319308 Query 61939 GGTGT 61943 ||||| Sbjct 3319309 GGTGT 3319313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567970927840