Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20busckii_20[refseq_20GCF_5F001277935.1_202015-09-02] 6 sequences; 135,748,557 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq1 132 7e-26 >seq1 Length=33300182 Score = 132 bits (146), Expect = 7e-26 Identities = 241/348 (69%), Gaps = 10/348 (3%) Strand=Plus/Minus Query 162495 GGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAA 162554 ||| || || ||||| ||| || ||| | ||||||||||| ||||||| ||| || Sbjct 8135653 GGAAACGCCACAGAATGAACAGACCCCATTTTATCCACGATCACCTTATGCTTGTGCCAA 8135594 Query 162555 ACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAG 162614 | ||||| || ||||| ||| ||||| |||||| || ||||| ||||| | Sbjct 8135593 GATGTATGGCTTTTGGATAGTCATCAACTATAGGGAAGCATACGACATGTTTGCCTGCAA 8135534 Query 162615 CGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGAT 162674 || || || ||||||||||| || ||||| | || || | || || |||||||| || Sbjct 8135533 TGGCATACTCTTCAATCACGAGAGTCCACGCCGTGGCGAAAGCTTTGTGACACGCAAAAT 8135474 Query 162675 CGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGA---TCTACAACTTGGAAA 162731 | | || ||| | || | | || | |||| || | | | || || || Sbjct 8135473 --TACACGCTCTGTTGCAAAG-ATTCTGCTAAATCAAATGGAATATTTTGAGCTGGGCAA 8135417 Query 162732 CCTCAATGCCCGA--CGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTG 162789 | | | ||| ||||| ||||| || ||||||||||| || ||||| |||||| || Sbjct 8135416 TTTGGA--CTCGAAGCGTGATTGGGGCCATGCCAAAGACTATGTGGAGGCCATGTGGATG 8135359 Query 162790 ATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 ||||| |||| || |||| | |||||||||||| || ||||||||| Sbjct 8135358 ATGCTGCAGCGCGATGAGCCGGCTGATTATGTGATTGCGACTGGTGAG 8135311 Score = 102 bits (112), Expect = 1e-16 Identities = 196/284 (69%), Gaps = 10/284 (4%) Strand=Plus/Minus Query 162559 TATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGT 162618 ||||| || ||||| ||| ||||| |||||| || ||||| ||||| | || Sbjct 4445259 TATGGCTTTTGGATAGTCATCAACTATAGGGAAGCATAAGACATGTTTGCCTGCAATGGC 4445200 Query 162619 ATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTC 162678 || || ||||||||||| || ||||| | || || | || || |||||||| || | Sbjct 4445199 ATACTCTTCAATCACGAGAGTCCACGCCGTGGTGAAAACTTTGTGACACGCAAAAT--TA 4445142 Query 162679 CGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGA---TCTACAACTTGGAAACCTC 162735 | || ||| | || | | || | |||| || | | | || || || | Sbjct 4445141 CACGCTCTGTTGCAAAG-ATTCTGCTAAATCAAATGGAATATTTTGAGCTGGGCAATTTG 4445083 Query 162736 AATGCCCGA--CGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGC 162793 | | ||| ||||| ||||| || ||||||||||| || ||||| |||||| |||||| Sbjct 4445082 GA--CTCGAAGCGTGATTGGGGCCATGCCAAAGACTATGTGGAGGCCATGTGGATGATGC 4445025 Query 162794 TTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 | |||| || |||| | |||||||||||| || ||||||||| Sbjct 4445024 TGCAGCGCGATGAGCCGGCTGATTATGTGATTGCGACTGGTGAG 4444981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691459148140560