Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq5079 206 5e-51 seq4246 206 5e-51 seq4086 206 5e-51 seq4241 203 6e-50 seq4112 197 3e-48 seq30 197 3e-48 >seq5079 Length=1084440 Score = 206 bits (228), Expect = 5e-51 Identities = 248/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 999947 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 1000005 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 1000006 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 1000063 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| ||||||| Sbjct 1000064 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTCGAGTTG 1000119 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 1000120 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 1000179 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 1000180 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 1000239 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 1000240 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 1000270 >seq4246 Length=39263 Score = 206 bits (228), Expect = 5e-51 Identities = 248/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 38295 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 38353 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 38354 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 38411 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| ||||||| Sbjct 38412 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTCGAGTTG 38467 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 38468 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 38527 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 38528 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 38587 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 38588 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 38618 >seq4086 Length=80244 Score = 206 bits (228), Expect = 5e-51 Identities = 248/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 79276 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 79334 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 79335 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 79392 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| ||||||| Sbjct 79393 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTCGAGTTG 79448 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 79449 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 79508 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 79509 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAATGTCGGGGATGAGCTGTGGCTAGGGGT 79568 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 79569 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 79599 >seq4241 Length=507456 Score = 203 bits (224), Expect = 6e-50 Identities = 247/331 (75%), Gaps = 7/331 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 507076 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 507134 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 507135 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 507192 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 507193 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGCAGAGTTG 507248 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 507249 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 507308 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 507309 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 507368 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 507369 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 507399 >seq4112 Length=151011 Score = 197 bits (218), Expect = 3e-48 Identities = 246/331 (74%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 381 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 323 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 322 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 265 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| | ||||| Sbjct 264 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTCTAGTTG 209 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 208 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 149 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 148 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 89 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| ||| |||||| || Sbjct 88 GAAAGGCCAATCAAACTCGGAGATAGCTGGT 58 >seq30 Length=443100 Score = 197 bits (218), Expect = 3e-48 Identities = 246/331 (74%), Gaps = 7/331 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| ||||| |||| ||| |||||||||| ||||||||| Sbjct 152564 CCCGACGAGGGGAGTGAAAGAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 152622 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 152623 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 152680 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 ||||| | ||| ||| || || ||||||||| || || |||||| |||||| Sbjct 152681 CTTAAGCCGAT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGCAGAGTTG 152736 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 |||| |||| ||||||| |||||||| ||| | |||| ||||| |||||||| | Sbjct 152737 CTGGCAGAAGACCCGAAACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACAC 152796 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 | |||||| ||||||| |||||||| | |||||| | || ||||||| Sbjct 152797 GCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAGTCGGGGATGAGCTGTGGCTAGGGGT 152856 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||| |||||||||| || Sbjct 152857 GAAAGGCCAATCAAACTCGGAAATAGCTGGT 152887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972747186688