Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4488 127 4e-27 seq1831 127 4e-27 seq5111 125 1e-26 seq1808 123 5e-26 seq1939 120 6e-25 seq1757 91.5 3e-16 seq3994 77.0 6e-12 >seq4488 Length=533506 Score = 127 bits (140), Expect = 4e-27 Identities = 184/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 449151 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 449092 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 449091 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 449033 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 449032 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 448973 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| ||||||||||||||||| ||||| Sbjct 448972 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACG 448914 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 448913 AAAGTTAGAGG 448903 >seq1831 Length=1301 Score = 127 bits (140), Expect = 4e-27 Identities = 184/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 962 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 1021 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 1022 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 1080 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 1081 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 1140 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| ||||||||||||||||| ||||| Sbjct 1141 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACG 1199 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 1200 AAAGTTAGAGG 1210 >seq5111 Length=14613 Score = 125 bits (138), Expect = 1e-26 Identities = 184/252 (73%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATA--CATTAGCA 129 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | | || Sbjct 13983 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGTCA 13924 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAAT 187 ||| ||||| |||| ||| | | ||||| ||| ||||||| || | | ||||| Sbjct 13923 TGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAAT 13865 Query 188 GATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 13864 GATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGAC 13805 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||||||||| |||||||| || |||| ||||||||||||||||| |||| Sbjct 13804 CGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAAC 13746 Query 307 GAAAGTTAGGGG 318 ||||||||| || Sbjct 13745 GAAAGTTAGAGG 13734 >seq1808 Length=1186 Score = 123 bits (136), Expect = 5e-26 Identities = 183/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 512 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 453 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 452 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 394 Query 189 ATTAATAGGGATAGTCGGGG-GTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||| | | |||||| | |||||||||||||||||| Sbjct 393 ATTAATAGAAGCAGTTTGGGAGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 334 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| ||||||||||||||||| ||||| Sbjct 333 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACG 275 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 274 AAAGTTAGAGG 264 >seq1939 Length=1146 Score = 120 bits (132), Expect = 6e-25 Identities = 183/251 (73%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA-CATTAGCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 80 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 139 Query 131 GGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 140 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 198 Query 189 ATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| || | ||||| | |||||| | |||||||||||||||||| Sbjct 199 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 258 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| ||| |||| || |||| ||||||||||||||||| ||||| Sbjct 259 GTCGTAAGACTAACTTAAGCG-AAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACG 316 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 317 AAAGTTAGAGG 327 >seq1757 Length=1123 Score = 91.5 bits (100), Expect = 3e-16 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCT 241 |||||||||||||| ||| ||||| | |||||| | |||||||||||||| Sbjct 1118 GTAATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCT 1059 Query 242 TGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 |||| |||||||||| |||||||| || |||| ||||||||||||||||| Sbjct 1058 TGGACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA- 1000 Query 302 TGAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 999 AGAACGAAAGTTAGAGG 983 >seq3994 Length=1041 Score = 77.0 bits (84), Expect = 6e-12 Identities = 145/206 (70%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA-CATTAGCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 377 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 436 Query 131 GGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||| ||| || | | |||||| Sbjct 437 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGATTTTCAGATCAAGAGGTAATG 495 Query 189 ATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| || | ||||| | |||||| | |||||||||||||||||| Sbjct 496 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 555 Query 248 TATTGAAGACTAACTACTGCGAAAGC 273 |||||||||| |||||||| Sbjct 556 GTCGTAAGACTAACTTAAGCGAAAGC 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915150313792