Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4241 114 1e-23 seq30 114 1e-23 seq5079 109 5e-22 seq4086 105 6e-21 seq4246 98.7 9e-19 seq4112 98.7 9e-19 >seq4241 Length=507456 Score = 114 bits (126), Expect = 1e-23 Identities = 142/193 (74%), Gaps = 21/193 (11%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| | |||||||| ||||||||| | ||||||||||| Sbjct 506626 GGCATTCGGTGGATGCCTTGGCACCAGGAGGCGACGAAGGACGTAGCACGCTGCGAAAAG 506685 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC------ 114 ||||||||| || | | ||||||||| |||||||||||||||||||||| Sbjct 506686 CTACGGGGAGCCGCGAGCAGGCATTGATCCGCAGATATCCGAATGGGGCAACCCACCCGC 506745 Query 115 ---GATAT----ATTGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTG 167 | ||| || || ||| |||| |||| | |||||||| ||||||||| Sbjct 506746 AAGGGTATCACAATCTGA-ATA---CATAGGGCTACG----AGGCGAACCCGGGGAACTG 506797 Query 168 AAACATCTAAGTA 180 |||||||| |||| Sbjct 506798 AAACATCTCAGTA 506810 >seq30 Length=443100 Score = 114 bits (126), Expect = 1e-23 Identities = 142/193 (74%), Gaps = 21/193 (11%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| | |||||||| ||||||||| | ||||||||||| Sbjct 152114 GGCATTCGGTGGATGCCTTGGCACCAGGAGGCGACGAAGGACGTAGCACGCTGCGAAAAG 152173 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC------ 114 ||||||||| || | | ||||||||| |||||||||||||||||||||| Sbjct 152174 CTACGGGGAGCCGCGAGCAGGCATTGATCCGCAGATATCCGAATGGGGCAACCCACCCGC 152233 Query 115 ---GATAT----ATTGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTG 167 | ||| || || ||| |||| |||| | |||||||| ||||||||| Sbjct 152234 AAGGGTATCACAATCTGA-ATA---CATAGGGCTACG----AGGCGAACCCGGGGAACTG 152285 Query 168 AAACATCTAAGTA 180 |||||||| |||| Sbjct 152286 AAACATCTCAGTA 152298 >seq5079 Length=1084440 Score = 109 bits (120), Expect = 5e-22 Identities = 140/189 (74%), Gaps = 13/189 (7%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| || | |||||||| ||||||||| | ||||||||||| Sbjct 999496 GGCATTCGGTGGATGCCTTGGTACCAGGAGGCGATGAAGGACGTAGCACGCTGCGAAAAG 999555 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCA----ACCCGA 116 ||||||||| || | | ||||||||||||||||||||||||||| ||||| Sbjct 999556 CTACGGGGAGCCGCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGC 999615 Query 117 TA---TATTGGAG-ATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAAC 171 | ||| || | || |||| ||| || |||||||| ||||||||||||| Sbjct 999616 AAGGGTATCACAGTCTGAATACATAGGGCT----GTGAGGCGAACCCGGGGAACTGAAAC 999671 Query 172 ATCTAAGTA 180 |||| |||| Sbjct 999672 ATCTCAGTA 999680 >seq4086 Length=80244 Score = 105 bits (116), Expect = 6e-21 Identities = 135/182 (74%), Gaps = 13/182 (7%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| || | |||||||| ||||||||| | |||||||||||||||||| Sbjct 78832 GGTGGATGCCTTGGTACCAGGAGGCGATGAAGGACGTAGCACGCTGCGAAAAGCTACGGG 78891 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCA----ACCCGATA---TA 120 || || | | ||||||||||||||||||||||||||| ||||| | || Sbjct 78892 GAGCCGCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAAGGGTA 78951 Query 121 TTGGAG-ATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAG 178 | || | || |||| ||| || |||||||| ||||||||||||||||| || Sbjct 78952 TCACAGTCTGAATACATAGGGCT----GTGAGGCGAACCCGGGGAACTGAAACATCTCAG 79007 Query 179 TA 180 || Sbjct 79008 TA 79009 >seq4246 Length=39263 Score = 98.7 bits (108), Expect = 9e-19 Identities = 134/182 (74%), Gaps = 14/182 (8%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| || | |||||||| ||||||||| | ||||||||| |||||||| Sbjct 37852 GGTGGATGCCTTGGTACCAGGAGGCGATGAAGGACGTAGCACGCTGCGAAA-GCTACGGG 37910 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCA----ACCCGATA---TA 120 || || | | ||||||||||||||||||||||||||| ||||| | || Sbjct 37911 GAGCCGCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAAGGGTA 37970 Query 121 TTGGAG-ATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAG 178 | || | || |||| ||| || |||||||| ||||||||||||||||| || Sbjct 37971 TCACAGTCTGAATACATAGGGCT----GTGAGGCGAACCCGGGGAACTGAAACATCTCAG 38026 Query 179 TA 180 || Sbjct 38027 TA 38028 >seq4112 Length=151011 Score = 98.7 bits (108), Expect = 9e-19 Identities = 138/191 (72%), Gaps = 17/191 (9%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| || || |||||||| ||||||||| | ||||||| ||| Sbjct 831 GGCATTCGGTGGATGCCTTGGTACTAGGAGGCGATGAAGGACGTAGCACGCTGCGATAAG 772 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC------ 114 || ||||| || | | ||||||||||||| ||||||||||||||||| Sbjct 771 CTGTGGGGAGCCGCGAGCAGGCTTTGATCCGTAGATTTCCGAATGGGGCAACCCACCCGC 712 Query 115 ---GATATATTGG--AGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAA 169 | ||| ||| || ||| |||| | | || |||||||| ||||||||||| Sbjct 711 ATGGGTATCGTGGTCTGA-ATA-CATAGGGTT----GTGAGGCGAACCCGGGGAACTGAA 658 Query 170 ACATCTAAGTA 180 |||||| |||| Sbjct 657 ACATCTCAGTA 647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476774923449