Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq5079 154 2e-35 seq4704 154 2e-35 seq30 154 2e-35 >seq5079 Length=1084440 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 805654 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 805596 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 805595 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 805543 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 805542 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 805487 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 805486 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 805427 Query 240 TTTACGGTA 248 ||| |||| Sbjct 805426 TTTCGGGTA 805418 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 1001199 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 1001141 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 1001140 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 1001088 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 1001087 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 1001032 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 1001031 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 1000972 Query 240 TTTACGGTA 248 ||| |||| Sbjct 1000971 TTTCGGGTA 1000963 >seq4704 Length=42152 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 41383 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 41441 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 41442 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 41494 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 41495 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 41550 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 41551 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 41610 Query 240 TTTACGGTA 248 ||| |||| Sbjct 41611 TTTCGGGTA 41619 >seq30 Length=443100 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 153288 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 153230 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 153229 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 153177 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 153176 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 153121 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 153120 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 153061 Query 240 TTTACGGTA 248 ||| |||| Sbjct 153060 TTTCGGGTA 153052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694363479117