Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq5079 82.4 8e-14 seq4704 82.4 8e-14 seq30 82.4 8e-14 >seq5079 Length=1084440 Score = 82.4 bits (90), Expect = 8e-14 Identities = 127/179 (71%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || |||| |||||||||||| ||| | | | |||| Sbjct 805424 AAACCGACACAGGTGGACTGGTAGAGAATACCAAGGCGCTTGAGAGAACGATGCTGAAGG 805483 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA-AGGGTCCC-----TACCCAGAAATG 138 ||||||||||| | | |||||||||||||||| | | ||| | || || Sbjct 805484 AACTAGGCAAATTACTCGTGTAACTTCGGGATAAGCGAGACCCGTTGGTGGGCAACCATT 805543 Query 139 GGAGGG-CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||| ||| ||| ||| || |||||||| |||||||||||||| ||| || Sbjct 805544 GGCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAA 805602 Score = 82.4 bits (90), Expect = 8e-14 Identities = 127/179 (71%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || |||| |||||||||||| ||| | | | |||| Sbjct 1000969 AAACCGACACAGGTGGACTGGTAGAGAATACCAAGGCGCTTGAGAGAACGATGCTGAAGG 1001028 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA-AGGGTCCC-----TACCCAGAAATG 138 ||||||||||| | | |||||||||||||||| | | ||| | || || Sbjct 1001029 AACTAGGCAAATTACTCGTGTAACTTCGGGATAAGCGAGACCCGTTGGTGGGCAACCATT 1001088 Query 139 GGAGGG-CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||| ||| ||| ||| || |||||||| |||||||||||||| ||| || Sbjct 1001089 GGCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAA 1001147 >seq4704 Length=42152 Score = 82.4 bits (90), Expect = 8e-14 Identities = 127/179 (71%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || |||| |||||||||||| ||| | | | |||| Sbjct 41613 AAACCGACACAGGTGGACTGGTAGAGAATACCAAGGCGCTTGAGAGAACGATGCTGAAGG 41554 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA-AGGGTCCC-----TACCCAGAAATG 138 ||||||||||| | | |||||||||||||||| | | ||| | || || Sbjct 41553 AACTAGGCAAATTACTCGTGTAACTTCGGGATAAGCGAGACCCGTTGGTGGGCAACCATT 41494 Query 139 GGAGGG-CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||| ||| ||| ||| || |||||||| |||||||||||||| ||| || Sbjct 41493 GGCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAA 41435 >seq30 Length=443100 Score = 82.4 bits (90), Expect = 8e-14 Identities = 127/179 (71%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || |||| |||||||||||| ||| | | | |||| Sbjct 153058 AAACCGACACAGGTGGACTGGTAGAGAATACCAAGGCGCTTGAGAGAACGATGCTGAAGG 153117 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA-AGGGTCCC-----TACCCAGAAATG 138 ||||||||||| | | |||||||||||||||| | | ||| | || || Sbjct 153118 AACTAGGCAAATTACTCGTGTAACTTCGGGATAAGCGAGACCCGTTGGTGGGCAACCATT 153177 Query 139 GGAGGG-CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||| ||| ||| ||| || |||||||| |||||||||||||| ||| || Sbjct 153178 GGCGGGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAA 153236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531172062366