Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq5079 334 2e-89 seq4704 334 2e-89 seq30 334 2e-89 >seq5079 Length=1084440 Score = 334 bits (370), Expect = 2e-89 Identities = 325/420 (77%), Gaps = 25/420 (6%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||||||| | |||||||||| | || ||||||||| ||||| | | |||||||||| Sbjct 805838 CGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGC 805779 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805778 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 805719 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||||||||||||||| || || ||| Sbjct 805718 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGTGCT-------- 805667 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 || || || | |||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 805666 -CTCACACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTT 805608 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||| || |||||| ||||||||||| ||||||||||| | |||||| | | | ||| Sbjct 805607 TCGACTTCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGCCACC 805548 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCAC-CTTCTCCCGAAGTTAC 359 || ||| | || || || ||| | | ||| |||||||||||| Sbjct 805547 CGC--------------CAA-TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTAC 805503 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 805502 ACGAGTAATTTGCCTAGTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACC 805443 Score = 331 bits (366), Expect = 2e-88 Identities = 325/420 (77%), Gaps = 26/420 (6%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||||||| | |||||||||| | || ||||||||| ||||| | | |||||||||| Sbjct 1001382 CGCGGATACCC-GCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGC 1001324 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001323 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1001264 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||||||||||||||| || || ||| Sbjct 1001263 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGTGCT-------- 1001212 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 || || || | |||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1001211 -CTCACACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTT 1001153 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||| || |||||| ||||||||||| ||||||||||| | |||||| | | | ||| Sbjct 1001152 TCGACTTCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGCCACC 1001093 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCAC-CTTCTCCCGAAGTTAC 359 || ||| | || || || ||| | | ||| |||||||||||| Sbjct 1001092 CGC--------------CAA-TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTAC 1001048 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1001047 ACGAGTAATTTGCCTAGTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACC 1000988 >seq4704 Length=42152 Score = 334 bits (370), Expect = 2e-89 Identities = 325/420 (77%), Gaps = 25/420 (6%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||||||| | |||||||||| | || ||||||||| ||||| | | |||||||||| Sbjct 41199 CGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGC 41258 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41259 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 41318 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||||||||||||||| || || ||| Sbjct 41319 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGTGCT-------- 41370 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 || || || | |||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 41371 -CTCACACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTT 41429 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||| || |||||| ||||||||||| ||||||||||| | |||||| | | | ||| Sbjct 41430 TCGACTTCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGCCACC 41489 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCAC-CTTCTCCCGAAGTTAC 359 || ||| | || || || ||| | | ||| |||||||||||| Sbjct 41490 CGC--------------CAA-TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTAC 41534 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 41535 ACGAGTAATTTGCCTAGTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACC 41594 >seq30 Length=443100 Score = 334 bits (370), Expect = 2e-89 Identities = 325/420 (77%), Gaps = 25/420 (6%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||||||| | |||||||||| | || ||||||||| ||||| | | |||||||||| Sbjct 153472 CGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCCGATGCTGGAGACAGC 153413 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153412 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 153353 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||||||||||||||| || || ||| Sbjct 153352 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAGTGCT-------- 153301 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 || || || | |||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 153300 -CTCACACCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTT 153242 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||| || |||||| ||||||||||| ||||||||||| | |||||| | | | ||| Sbjct 153241 TCGACTTCGCAGAGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGCCACC 153182 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCAC-CTTCTCCCGAAGTTAC 359 || ||| | || || || ||| | | ||| |||||||||||| Sbjct 153181 CGC--------------CAA-TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTAC 153137 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 153136 ACGAGTAATTTGCCTAGTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACC 153077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260731551168