Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq5079 163 6e-38 seq4704 163 6e-38 seq30 163 6e-38 >seq5079 Length=1084440 Score = 163 bits (180), Expect = 6e-38 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 806011 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 806070 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 ||| | | | | ||||| || ||||||| | ||||||| |||| ||| Sbjct 806071 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 806130 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| | || || ||||| |||||||||||| | || |||||||| || Sbjct 806131 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 806190 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | ||||| |||| |||||| ||||||||||| ||| || |||||| Sbjct 806191 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 806240 Score = 163 bits (180), Expect = 6e-38 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1001555 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 1001614 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 ||| | | | | ||||| || ||||||| | ||||||| |||| ||| Sbjct 1001615 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 1001674 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| | || || ||||| |||||||||||| | || |||||||| || Sbjct 1001675 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 1001734 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | ||||| |||| |||||| ||||||||||| ||| || |||||| Sbjct 1001735 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 1001784 >seq4704 Length=42152 Score = 163 bits (180), Expect = 6e-38 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 41026 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 40967 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 ||| | | | | ||||| || ||||||| | ||||||| |||| ||| Sbjct 40966 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 40907 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| | || || ||||| |||||||||||| | || |||||||| || Sbjct 40906 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 40847 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | ||||| |||| |||||| ||||||||||| ||| || |||||| Sbjct 40846 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 40797 >seq30 Length=443100 Score = 163 bits (180), Expect = 6e-38 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 153645 CGGGACCCTGTATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGG 153704 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 ||| | | | | ||||| || ||||||| | ||||||| |||| ||| Sbjct 153705 CGCGCGATGGTGGGCTCAGGCCGGTCGGAAACCGGCTGTTGAGTGCAATGGCATAAGCCC 153764 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| | || || ||||| |||||||||||| | || |||||||| || Sbjct 153765 GCCTGACTGCGAGAGTGACAGCTCGAGCAGAGACGAAAGTCGGCCATAGTGATCCGGTGG 153824 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | ||||| |||| |||||| ||||||||||| ||| || |||||| Sbjct 153825 TCCCGCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTAGGGATA 153874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982346665504