Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4246 441 3e-121 seq4086 441 3e-121 seq5079 434 4e-119 seq4112 379 7e-103 seq4241 376 9e-102 seq30 370 4e-100 >seq4246 Length=39263 Score = 441 bits (488), Expect = 3e-121 Identities = 458/592 (77%), Gaps = 19/592 (3%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| | ||| |||| | ||| | |||| | ||| ||| | |||||| || ||||| Sbjct 38780 TCGACAATGGACCTTAG-CACCCACTGTCTGTCTGCCAGGCTAT-ACTTCCGGGTATTCG 38723 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC-TAGACCATCCAGTGCTCTACCTCC 119 |||||||||| || |||||| | ||||||||| ||| ||||||||||||||||| || Sbjct 38722 GAGTTTGGTTAGGTTTGGTAAGGCTTTGGGCCCCCCTAGCCCATCCAGTGCTCTACCCCC 38663 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||| || |||| | |||| ||| |||||| |||||||||||||| | || Sbjct 38662 CGGGGTAAATACCTGACGGTCTACCTCAATAGATTTCGCGGAGAACCAGCTATTTCCGAG 38603 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| |||||| |||||||| |||||||| |||||| Sbjct 38602 TTTGATTGGCCTTTCACCCCTAGCCACAGCTCATCCCCGACTTTTTCAACAGGCGTGGGT 38543 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||| |||||| || ||||| ||||| |||| |||||| ||||||||| | || Sbjct 38542 TCGGCCCTCCAGTGCGTGTTACCGCACCTTCAGCCTGGCCATGGCTAGATCACTCGGTTT 38483 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 |||||||| | || |||| ||||||||||| ||||||||||||||||| |||| || Sbjct 38482 CGGGTCTTCTGCCAGCAACTC-GACGCCCTATTCAGACTCGCTTTCGCTACGCCTACACC 38424 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||| |||| ||||| || ||| |||||||| | | |||| | ||||||| ||||| Sbjct 38423 TATCGGCTTAAGCTCGCTGCA-AACAGAAACTCGCTGACCCATTATACAAAAGGTACGCC 38365 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 |||||| | ||| || |||||||| | ||||||||| |||||||||| Sbjct 38364 GTCACC----CCATAAGAG--------GCTCCGACTGCTTGTAGGCATCCGGTTTCAGGT 38317 Query 480 ACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 |||||||||||||| | ||||| |||||||||||||||||||||||||||| | ||| Sbjct 38316 -CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTA 38258 Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 |||||||||| ||||||||||||||| |||||||||| ||| |||| || Sbjct 38257 TCGGTCACCAGGGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 38206 >seq4086 Length=80244 Score = 441 bits (488), Expect = 3e-121 Identities = 458/592 (77%), Gaps = 19/592 (3%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| | ||| |||| | ||| | |||| | ||| ||| | |||||| || ||||| Sbjct 79761 TCGACAATGGACCTTAG-CACCCACTGTCTGTCTGCCAGGCTAT-ACTTCCGGGTATTCG 79704 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC-TAGACCATCCAGTGCTCTACCTCC 119 |||||||||| || |||||| | ||||||||| ||| ||||||||||||||||| || Sbjct 79703 GAGTTTGGTTAGGTTTGGTAAGGCTTTGGGCCCCCCTAGCCCATCCAGTGCTCTACCCCC 79644 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||| || |||| | |||| ||| |||||| |||||||||||||| | || Sbjct 79643 CGGGGTAAATACCTGACGGTCTACCTCAATAGATTTCGCGGAGAACCAGCTATTTCCGAG 79584 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| |||||| |||||||| |||||||| |||||| Sbjct 79583 TTTGATTGGCCTTTCACCCCTAGCCACAGCTCATCCCCGACATTTTCAACAGGCGTGGGT 79524 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||| |||||| || ||||| ||||| |||| |||||| ||||||||| | || Sbjct 79523 TCGGCCCTCCAGTGCGTGTTACCGCACCTTCAGCCTGGCCATGGCTAGATCACTCGGTTT 79464 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 |||||||| | || |||| ||||||||||| ||||||||||||||||| |||| || Sbjct 79463 CGGGTCTTCTGCCAGCAACTC-GACGCCCTATTCAGACTCGCTTTCGCTACGCCTACACC 79405 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||| |||| ||||| || ||| |||||||| | | |||| | ||||||| ||||| Sbjct 79404 TATCGGCTTAAGCTCGCTGCA-AACAGAAACTCGCTGACCCATTATACAAAAGGTACGCC 79346 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 |||||| | ||| || |||||||| | ||||||||| |||||||||| Sbjct 79345 GTCACC----CCATAAGAG--------GCTCCGACTGCTTGTAGGCATCCGGTTTCAGGT 79298 Query 480 ACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 |||||||||||||| | ||||| |||||||||||||||||||||||||||| | ||| Sbjct 79297 -CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTA 79239 Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 |||||||||| ||||||||||||||| |||||||||| ||| |||| || Sbjct 79238 TCGGTCACCAGGGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 79187 >seq5079 Length=1084440 Score = 434 bits (480), Expect = 4e-119 Identities = 458/593 (77%), Gaps = 20/593 (3%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| | ||| |||| | ||| | |||| | ||| ||| | |||||| || ||||| Sbjct 1000433 TCGACAATGGACCTTAG-CACCCACTGTCTGTCTGCCAGGCTAT-ACTTCCGGGTATTCG 1000376 Query 61 G-AGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC-TAGACCATCCAGTGCTCTACCTC 118 | ||||||||| || |||||| | ||||||||| ||| ||||||||||||||||| | Sbjct 1000375 GGAGTTTGGTTAGGTTTGGTAAGGCTTTGGGCCCCCCTAGCCCATCCAGTGCTCTACCCC 1000316 Query 119 CGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAA 178 | || ||| || |||| | |||| ||| |||||| |||||||||||||| | | Sbjct 1000315 CCGGGGTAAATACCTGACGGTCTACCTCAATAGATTTCGCGGAGAACCAGCTATTTCCGA 1000256 Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||||||||||||||||||||||| |||||| |||||||| |||||||| ||||| Sbjct 1000255 GTTTGATTGGCCTTTCACCCCTAGCCACAGCTCATCCCCGACTTTTTCAACAGGCGTGGG 1000196 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298 ||||| |||||| || ||||| ||||| |||| |||||| ||||||||| | | Sbjct 1000195 TTCGGCCCTCCAGTGCGTGTTACCGCACCTTCAGCCTGGCCATGGCTAGATCACTCGGTT 1000136 Query 299 TCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCC 358 ||||||||| | || |||| ||||||||||| ||||||||||||||||| |||| | Sbjct 1000135 TCGGGTCTTCTGCCAGCAACTC-GACGCCCTATTCAGACTCGCTTTCGCTACGCCTACAC 1000077 Query 359 CACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGC 418 | ||| |||| ||||| || ||| |||||||| | | |||| | ||||||| |||| Sbjct 1000076 CTATCGGCTTAAGCTCGCTGCA-AACAGAAACTCGCTGACCCATTATACAAAAGGTACGC 1000018 Query 419 CGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGG 478 ||||||| | ||| || |||||||| | ||||||||| ||||||||| Sbjct 1000017 CGTCACC----CCATAAGAG--------GCTCCGACTGCTTGTAGGCATCCGGTTTCAGG 999970 Query 479 TACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 | |||||||||||||| | ||||| |||||||||||||||||||||||||||| | || Sbjct 999969 T-CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACT 999911 Query 538 ATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 ||||||||||| ||||||||||||||| |||||||||| ||| |||| || Sbjct 999910 ATCGGTCACCAGGGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 999858 >seq4112 Length=151011 Score = 379 bits (420), Expect = 7e-103 Identities = 378/485 (78%), Gaps = 16/485 (3%) Strand=Plus/Plus Query 107 GTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACC 166 |||||||||| || || ||| || |||| | |||| ||| |||||| |||||||| Sbjct 1 GTGCTCTACCCCCCGGGGTAAATACCTGACGGTCTACCTCAATAGATTTCGCGGAGAACC 60 Query 167 AGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTC 226 ||||||| | |||||||||||||||||||||||| |||||| |||||||| ||||| Sbjct 61 AGCTATCTCCGAGTTTGATTGGCCTTTCACCCCTAGCCACAGCTCATCCCCGACTTTTTC 120 Query 227 AACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATA 286 ||| |||||||||| |||||| || ||||| ||||| |||| |||||| || Sbjct 121 AACAGGCGTGGGTTCGGCCCTCCAGTGCGTGTTACCGCACCTTCAGCCTGGCCATGGCTA 180 Query 287 GATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCG 346 ||||||| | |||||||||| | || ||| | ||||||||||| |||||||||||| Sbjct 181 GATCACTCGGTTTCGGGTCTTCTGCCAGCAACT-AGACGCCCTATTCAGACTCGCTTTCG 239 Query 347 CTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTT 406 ||||| |||| || ||| |||| ||||| || ||| |||||||| | | |||| | Sbjct 240 CTACGCCTACACCTATCGGCTTAAGCTCGCTGCA-AACAGAAACTCGCTGACCCATTATA 298 Query 407 CAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||||||| ||||||||||| | ||| || |||||||| | ||||||||| Sbjct 299 CAAAAGGTACGCCGTCACC----CCATAAGAG--------GCTCCGACTGCTTGTAGGCA 346 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGG 525 |||||||||| |||||||||||||| | ||||| ||||||||||||||||||||| Sbjct 347 TCCGGTTTCAGGT-CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGG 405 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 ||||||| | ||||||||||||| ||||||||||||||| |||||||||| ||| || Sbjct 406 TACTTGTTCACTATCGGTCACCAGGGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTT 465 Query 586 CACAC 590 || || Sbjct 466 CAGAC 470 >seq4241 Length=507456 Score = 376 bits (416), Expect = 9e-102 Identities = 377/485 (78%), Gaps = 16/485 (3%) Strand=Plus/Minus Query 107 GTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACC 166 |||||||||| || || ||| || |||| | |||| ||| |||||| |||||||| Sbjct 507456 GTGCTCTACCCCCCGGGGTAAATACCTGACGGTCTACCTCAATAGATTTCGCGGAGAACC 507397 Query 167 AGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTC 226 |||||| | |||||||||||||||||||||||| |||||| |||||||| ||||| Sbjct 507396 AGCTATTTCCGAGTTTGATTGGCCTTTCACCCCTAGCCACAGCTCATCCCCGACTTTTTC 507337 Query 227 AACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATA 286 ||| |||||||||| |||||| || ||||| ||||| |||| |||||| || Sbjct 507336 AACAGGCGTGGGTTCGGCCCTCCAGTGCGTGTTACCGCACCTTCAGCCTGGCCATGGCTA 507277 Query 287 GATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCG 346 ||||||| | |||||||||| | || |||| | |||||||||| |||||||||||| Sbjct 507276 GATCACTCGGTTTCGGGTCTTCTGCCAGCAACTC-TGCGCCCTATTCAGACTCGCTTTCG 507218 Query 347 CTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTT 406 ||||| |||| || ||| |||| ||||| || ||| |||||||| | | |||| | Sbjct 507217 CTACGCCTACACCTATCGGCTTAAGCTCGCTGCA-AACAGAAACTCGCTGACCCATTATA 507159 Query 407 CAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||||||| ||||||||||| | ||| || |||||||| | ||||||||| Sbjct 507158 CAAAAGGTACGCCGTCACC----CCATAAGAG--------GCTCCGACTGCTTGTAGGCA 507111 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGG 525 |||||||||| |||||||||||||| | ||||| ||||||||||||||||||||| Sbjct 507110 TCCGGTTTCAGGT-CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGG 507052 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 ||||||| ||||||||||||| | ||||||||||||||| |||||||||| ||| || Sbjct 507051 TACTTGTTCGCTATCGGTCACTAGGGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTT 506992 Query 586 CACAC 590 || || Sbjct 506991 CAGAC 506987 >seq30 Length=443100 Score = 370 bits (410), Expect = 4e-100 Identities = 376/485 (78%), Gaps = 16/485 (3%) Strand=Plus/Minus Query 107 GTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACC 166 |||||||||| || || ||| || |||| | |||| ||| |||||| |||||||| Sbjct 152944 GTGCTCTACCCCCCGGGGTAAATACCTGACGGTCTACCTCAATAGATTTCGCGGAGAACC 152885 Query 167 AGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTC 226 |||||| | |||||||||||||||||||||||| |||||| |||||||| ||||| Sbjct 152884 AGCTATTTCCGAGTTTGATTGGCCTTTCACCCCTAGCCACAGCTCATCCCCGACTTTTTC 152825 Query 227 AACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATA 286 ||| |||||||||| |||||| || ||||| ||||| |||| |||||| || Sbjct 152824 AACAGGCGTGGGTTCGGCCCTCCAGTGCGTGTTACCGCACCTTCAGCCTGGCCATGGCTA 152765 Query 287 GATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCG 346 ||||||| | |||||||||| | || |||| | |||||||||| |||||||||||| Sbjct 152764 GATCACTCGGTTTCGGGTCTTCTGCCAGCAACTC-TGCGCCCTATTCAGACTCGCTTTCG 152706 Query 347 CTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTT 406 ||||| |||| || ||| |||| ||||| || ||| |||||||| | | |||| | Sbjct 152705 CTACGCCTACACCTATCGGCTTAAGCTCGCTGCA-AACAGAAACTCGCTGACCCATTATA 152647 Query 407 CAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCA 466 ||||||| ||||||||||| | ||| || |||||||| | ||||||||| Sbjct 152646 CAAAAGGTACGCCGTCACC----CCATAAGAG--------GCTCCGACTGCTTGTAGGCA 152599 Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGG 525 |||||||||| || ||||||||||| | ||||| ||||||||||||||||||||| Sbjct 152598 TCCGGTTTCAGGT-CTCTTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGG 152540 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 ||||||| ||||||||||||| | ||||||||||||||| |||||||||| ||| || Sbjct 152539 TACTTGTTCGCTATCGGTCACTAGGGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTT 152480 Query 586 CACAC 590 || || Sbjct 152479 CAGAC 152475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817501322496