Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq4112 369 9e-100 seq5079 367 3e-99 seq4246 367 3e-99 seq4086 361 1e-97 seq4241 358 2e-96 seq30 352 7e-95 >seq4112 Length=151011 Score = 369 bits (408), Expect = 9e-100 Identities = 339/415 (82%), Gaps = 19/415 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 97 CCACAGCTCATCCCCG--ACTTTTTCAACAGGCGTGGGTTCGGCCCTCCAGTGCGT-GTT 153 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | ||||| Sbjct 154 ACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTGCCAGC 209 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||||||||||||| | ||||||||||| |||||||||| | ||||| | ||||||| Sbjct 210 AACTAGACGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTATCGGCTTAAGCT-- 266 Query 188 GCCACTGAAAATA---AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | ||| ||| | | |||||||||||||||||||||||||||| ||||||| | || Sbjct 267 --CGCTGCAAACAGAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCATAAG 324 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||||| |||||||||| |||| |||||||||| ||||||||||||||||| |||| Sbjct 325 A--GGCTCCGACTGCTTGTAGGCATCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGG 381 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| |||||||||||||||||| ||||||||||||||| | ||||||||| Sbjct 382 GTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACCAGGGAGTATTTAGG 441 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||| |||||||||||| |||||||| ||||| ||||| ||| ||||||| Sbjct 442 CTTGGAGGGTGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTC 496 >seq5079 Length=1084440 Score = 367 bits (406), Expect = 3e-99 Identities = 339/416 (81%), Gaps = 19/416 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 1000231 CCACAGCTCATCCCCG--ACTTTTTCAACAGGCGTGGGTTCGGCCCTCCAGTGCGT-GTT 1000175 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | ||||| Sbjct 1000174 ACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTGCCAGC 1000119 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| ||||||||| | ||||||||||| |||||||||| | ||||| | ||||||| Sbjct 1000118 AACTCGACGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTATCGGCTTAAGCT-- 1000062 Query 188 GCCACTGAAAATA---AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | ||| ||| | | |||||||||||||||||||||||||||| ||||||| | || Sbjct 1000061 --CGCTGCAAACAGAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCATAAG 1000004 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||||| |||||||||| |||| |||||||||| ||||||||||||||||| |||| Sbjct 1000003 A--GGCTCCGACTGCTTGTAGGCATCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGG 999947 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| |||||||||||||||||| ||||||||||||||| | ||||||||| Sbjct 999946 GTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACCAGGGAGTATTTAGG 999887 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| |||||||||||| |||||||| ||||| ||||| ||| |||||||| Sbjct 999886 CTTGGAGGGTGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 999831 >seq4246 Length=39263 Score = 367 bits (406), Expect = 3e-99 Identities = 339/416 (81%), Gaps = 19/416 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 38579 CCACAGCTCATCCCCG--ACTTTTTCAACAGGCGTGGGTTCGGCCCTCCAGTGCGT-GTT 38523 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | ||||| Sbjct 38522 ACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTGCCAGC 38467 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| ||||||||| | ||||||||||| |||||||||| | ||||| | ||||||| Sbjct 38466 AACTCGACGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTATCGGCTTAAGCT-- 38410 Query 188 GCCACTGAAAATA---AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | ||| ||| | | |||||||||||||||||||||||||||| ||||||| | || Sbjct 38409 --CGCTGCAAACAGAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCATAAG 38352 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||||| |||||||||| |||| |||||||||| ||||||||||||||||| |||| Sbjct 38351 A--GGCTCCGACTGCTTGTAGGCATCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGG 38295 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| |||||||||||||||||| ||||||||||||||| | ||||||||| Sbjct 38294 GTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACCAGGGAGTATTTAGG 38235 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| |||||||||||| |||||||| ||||| ||||| ||| |||||||| Sbjct 38234 CTTGGAGGGTGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 38179 >seq4086 Length=80244 Score = 361 bits (400), Expect = 1e-97 Identities = 338/416 (81%), Gaps = 19/416 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || || |||||||| | || ||||||| |||||||| || ||| Sbjct 79560 CCACAGCTCATCCCCG--ACATTTTCAACAGGCGTGGGTTCGGCCCTCCAGTGCGT-GTT 79504 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | ||||| Sbjct 79503 ACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTGCCAGC 79448 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| ||||||||| | ||||||||||| |||||||||| | ||||| | ||||||| Sbjct 79447 AACTCGACGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTATCGGCTTAAGCT-- 79391 Query 188 GCCACTGAAAATA---AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | ||| ||| | | |||||||||||||||||||||||||||| ||||||| | || Sbjct 79390 --CGCTGCAAACAGAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCATAAG 79333 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||||| |||||||||| |||| |||||||||| ||||||||||||||||| |||| Sbjct 79332 A--GGCTCCGACTGCTTGTAGGCATCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGG 79276 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| |||||||||||||||||| ||||||||||||||| | ||||||||| Sbjct 79275 GTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACCAGGGAGTATTTAGG 79216 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| |||||||||||| |||||||| ||||| ||||| ||| |||||||| Sbjct 79215 CTTGGAGGGTGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 79160 >seq4241 Length=507456 Score = 358 bits (396), Expect = 2e-96 Identities = 337/416 (81%), Gaps = 19/416 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 507360 CCACAGCTCATCCCCG--ACTTTTTCAACAGGCGTGGGTTCGGCCCTCCAGTGCGT-GTT 507304 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | ||||| Sbjct 507303 ACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTGCCAGC 507248 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| ||||||| | ||||||||||| |||||||||| | ||||| | ||||||| Sbjct 507247 AACTCTGCGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTATCGGCTTAAGCT-- 507191 Query 188 GCCACTGAAAATA---AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | ||| ||| | | |||||||||||||||||||||||||||| ||||||| | || Sbjct 507190 --CGCTGCAAACAGAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCATAAG 507133 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||||| |||||||||| |||| |||||||||| ||||||||||||||||| |||| Sbjct 507132 A--GGCTCCGACTGCTTGTAGGCATCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGG 507076 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| |||||||||||||||||| |||| |||||||||| | | ||||||||| Sbjct 507075 GTGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCACTAGGGAGTATTTAGG 507016 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| |||||||||||| |||||||| ||||| ||||| ||| |||||||| Sbjct 507015 CTTGGAGGGTGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 506960 >seq30 Length=443100 Score = 352 bits (390), Expect = 7e-95 Identities = 336/416 (81%), Gaps = 19/416 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || ||||||||||| | || ||||||| |||||||| || ||| Sbjct 152848 CCACAGCTCATCCCCG--ACTTTTTCAACAGGCGTGGGTTCGGCCCTCCAGTGCGT-GTT 152792 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | ||||| Sbjct 152791 ACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTGCCAGC 152736 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| ||||||| | ||||||||||| |||||||||| | ||||| | ||||||| Sbjct 152735 AACTCTGCGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTATCGGCTTAAGCT-- 152679 Query 188 GCCACTGAAAATA---AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | ||| ||| | | |||||||||||||||||||||||||||| ||||||| | || Sbjct 152678 --CGCTGCAAACAGAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCATAAG 152621 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||||| |||||||||| |||| |||||||||| ||| ||||||||||||| |||| Sbjct 152620 A--GGCTCCGACTGCTTGTAGGCATCCGGTTTCAGG-TCTCTTTCACTCCCCTCGTCGGG 152564 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| |||||||||||||||||| |||| |||||||||| | | ||||||||| Sbjct 152563 GTGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCACTAGGGAGTATTTAGG 152504 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| |||||||||||| |||||||| ||||| ||||| ||| |||||||| Sbjct 152503 CTTGGAGGGTGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 152448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241532593536