Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq5079 255 1e-65 seq4246 255 1e-65 seq4086 255 1e-65 seq4704 246 7e-63 >seq5079 Length=1084440 Score = 255 bits (282), Expect = 1e-65 Identities = 310/412 (75%), Gaps = 13/412 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||| |||||||||||| |||||| |||| | | || ||| | | Sbjct 1000841 CGACTACGGCTTTCGCCCTCGCCTTAGGGGCCGACTAACCCTGCGTGGATTAACCTTGCG 1000782 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | ||| | | | || ||||||||||| | Sbjct 1000781 CAGGAACCCTTGGACTTTCGGCGACAGTGCTTCTCGCACTGTTTGTCGCTACTCATGTCA 1000722 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGG-CAGCTTCACC-ACTGACAC 177 |||||| |||| | | ||||| | | ||||||| | | |||||| ||| || Sbjct 1000721 GCATTCGCACTTCCGATATCTCCAG-AGAGGGTCACCCCGTCTCCTTCACAGACTTACGG 1000663 Query 178 GACGCTCCCCTACCCAACCA--CACAGGT-TGC---CACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | || || | ||| |||||||||||| | ||| || Sbjct 1000662 AACGCTCCGCTACCGCGCATATCATAGATATGCACCCACAGCTTCGGCACGTGGCTTGAG 1000603 Query 232 CCCCGCTACATTATCGGCGC--GGAATCACTT-GACCAGTGAGCTATTACGCACTCTTTC 288 ||||| |||||| ||||||| || || || ||||||||||||||||||| ||||| Sbjct 1000602 CCCCGTTACATTTTCGGCGCAGGGTTTCTATTAGACCAGTGAGCTATTACGCTTTCTTTA 1000543 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||||||||||| ||||||||||||||||||| | | | | ||||||||||||||| Sbjct 1000542 AAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAATCCCCACATCCTTTCCCA 1000483 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || ||| | |||||||||||||||| || |||||||||||||||||||| Sbjct 1000482 CTTAGCCACGATTTAGGGGCCTTAGCTGGTGGTCTGGGCTGTTTCCCTCTCG 1000431 Score = 246 bits (272), Expect = 7e-63 Identities = 309/412 (75%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||| |||||||||||| |||||| |||| | | || ||| | | Sbjct 805297 CGACTACGGCTTTCGCCCTCGCCTTAGGGGCCGACTAACCCTGCGTGGATTAACCTTGCG 805238 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | ||| | | | || ||||||||||| | Sbjct 805237 CAGGAACCCTTGGACTTTCGGCGACAGTGTTTCTCGCACTGTTTGTCGCTACTCATGTCA 805178 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGG-CAGCTTCACC-ACTGACAC 177 |||||| |||| | | ||||| | | ||||||| | | |||||| ||| || Sbjct 805177 GCATTCGCACTTCCGATATCTCCAG-AGAGGGTCACCCCGTCTCCTTCACAGACTTACGG 805119 Query 178 GACGCTCCCCTACCCAACCA--CACAGGT-TGC---CACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | || || | ||| |||||||||||| | ||| || Sbjct 805118 AACGCTCCGCTACCGCGCATATCATAGATATGCACCCACAGCTTCGGCACGTGGCTTGAG 805059 Query 232 CCCCGCTACATTATCGGCGC--GGAATCACTT-GACCAGTGAGCTATTACGCACTCTTTC 288 ||||| |||||| ||||||| || || || ||||||||||||||||||| ||||| Sbjct 805058 CCCCGTTACATTTTCGGCGCAGGGTTTCTATTAGACCAGTGAGCTATTACGCTTTCTTTA 804999 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||||||||||| ||||||||||||||||||| | | | | ||||||||||||||| Sbjct 804998 AAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAATCCCCACATCCTTTCCCA 804939 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || ||| | |||||||||||||||| || ||||||||| |||||||||| Sbjct 804938 CTTAGCCACGATTTAGGGGCCTTAGCTGGTGGTCTGGGCTG-TTCCCTCTCG 804888 >seq4246 Length=39263 Score = 255 bits (282), Expect = 1e-65 Identities = 310/412 (75%), Gaps = 13/412 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||| |||||||||||| |||||| |||| | | || ||| | | Sbjct 39188 CGACTACGGCTTTCGCCCTCGCCTTAGGGGCCGACTAACCCTGCGTGGATTAACCTTGCG 39129 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | ||| | | | || ||||||||||| | Sbjct 39128 CAGGAACCCTTGGACTTTCGGCGACAGTGTTTCTCGCACTGTTTGTCGCTACTCATGTCA 39069 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGG-CAGCTTCACC-ACTGACAC 177 |||||| |||| | | ||||| | | ||||||| | | |||||| ||| || Sbjct 39068 GCATTCGCACTTCCGATATCTCCAG-AGAGGGTCACCCCGTCTCCTTCACAGACTTACGG 39010 Query 178 GACGCTCCCCTACCCAACCA--CACAGGT-TGC---CACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | || || | ||| |||||||||||| | ||| || Sbjct 39009 AACGCTCCGCTACCGCGCATATCATAGATATGCACCCACAGCTTCGGCACGTGGCTTGAG 38950 Query 232 CCCCGCTACATTATCGGCGC--GGAATCACTT-GACCAGTGAGCTATTACGCACTCTTTC 288 ||||| |||||| ||||||| || || || ||||||||||||||||||| ||||| Sbjct 38949 CCCCGTTACATTTTCGGCGCAGGGTTTCTATTAGACCAGTGAGCTATTACGCTTTCTTTA 38890 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||||||||||| ||||||||||||||||||| | | | | ||||||||||||||| Sbjct 38889 AAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAATCCCCACATCCTTTCCCA 38830 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || ||| | |||||||||||||||| || |||||||||||||||||||| Sbjct 38829 CTTAGCCACGATTTAGGGGCCTTAGCTGGTGGTCTGGGCTGTTTCCCTCTCG 38778 >seq4086 Length=80244 Score = 255 bits (282), Expect = 1e-65 Identities = 310/412 (75%), Gaps = 13/412 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||| |||||||||||| |||||| |||| | | || ||| | | Sbjct 80169 CGACTACGGCTTTCGCCCTCGCCTTAGGGGCCGACTAACCCTGCGTGGATTAACCTTGCG 80110 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | ||| | | | || ||||||||||| | Sbjct 80109 CAGGAACCCTTGGACTTTCGGCGACAGTGTTTCTCGCACTGTTTGTCGCTACTCATGTCA 80050 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGG-CAGCTTCACC-ACTGACAC 177 |||||| |||| | | ||||| | | ||||||| | | |||||| ||| || Sbjct 80049 GCATTCGCACTTCCGATATCTCCAG-AGAGGGTCACCCCGTCTCCTTCACAGACTTACGG 79991 Query 178 GACGCTCCCCTACCCAACCA--CACAGGT-TGC---CACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | || || | ||| |||||||||||| | ||| || Sbjct 79990 AACGCTCCGCTACCGCGCATATCATAGATATGCACCCACAGCTTCGGCACGTGGCTTGAG 79931 Query 232 CCCCGCTACATTATCGGCGC--GGAATCACTT-GACCAGTGAGCTATTACGCACTCTTTC 288 ||||| |||||| ||||||| || || || ||||||||||||||||||| ||||| Sbjct 79930 CCCCGTTACATTTTCGGCGCAGGGTTTCTATTAGACCAGTGAGCTATTACGCTTTCTTTA 79871 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||||||||||| ||||||||||||||||||| | | | | ||||||||||||||| Sbjct 79870 AAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAATCCCCACATCCTTTCCCA 79811 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || ||| | |||||||||||||||| || |||||||||||||||||||| Sbjct 79810 CTTAGCCACGATTTAGGGGCCTTAGCTGGTGGTCTGGGCTGTTTCCCTCTCG 79759 >seq4704 Length=42152 Score = 246 bits (272), Expect = 7e-63 Identities = 309/412 (75%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||| |||||||||||| |||||| |||| | | || ||| | | Sbjct 41741 CGACTACGGCTTTCGCCCTCGCCTTAGGGGCCGACTAACCCTGCGTGGATTAACCTTGCG 41800 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | ||| | | | || ||||||||||| | Sbjct 41801 CAGGAACCCTTGGACTTTCGGCGACAGTGTTTCTCGCACTGTTTGTCGCTACTCATGTCA 41860 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGG-CAGCTTCACC-ACTGACAC 177 |||||| |||| | | ||||| | | ||||||| | | |||||| ||| || Sbjct 41861 GCATTCGCACTTCCGATATCTCCAG-AGAGGGTCACCCCGTCTCCTTCACAGACTTACGG 41919 Query 178 GACGCTCCCCTACCCAACCA--CACAGGT-TGC---CACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | || || | ||| |||||||||||| | ||| || Sbjct 41920 AACGCTCCGCTACCGCGCATATCATAGATATGCACCCACAGCTTCGGCACGTGGCTTGAG 41979 Query 232 CCCCGCTACATTATCGGCGC--GGAATCACTT-GACCAGTGAGCTATTACGCACTCTTTC 288 ||||| |||||| ||||||| || || || ||||||||||||||||||| ||||| Sbjct 41980 CCCCGTTACATTTTCGGCGCAGGGTTTCTATTAGACCAGTGAGCTATTACGCTTTCTTTA 42039 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||||||||||| ||||||||||||||||||| | | | | ||||||||||||||| Sbjct 42040 AAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAATCCCCACATCCTTTCCCA 42099 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || ||| | |||||||||||||||| || ||||||||| |||||||||| Sbjct 42100 CTTAGCCACGATTTAGGGGCCTTAGCTGGTGGTCTGGGCTG-TTCCCTCTCG 42150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177536068096