Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4246 358 2e-96 seq4086 354 3e-95 seq5079 352 1e-94 seq4241 255 2e-65 seq30 255 2e-65 seq4112 251 2e-64 seq4704 84.2 7e-14 >seq4246 Length=39263 Score = 358 bits (396), Expect = 2e-96 Identities = 370/478 (77%), Gaps = 6/478 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | ||| ||||| | |||||||||||| ||||||||| |||| Sbjct 38443 CGAGTCTGAATAGGGCGTCGAGTTGCTGGCAGAAGACCCGAAACCGAGTGATCTAGCCAT 38502 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||| Sbjct 38503 GGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAG 38562 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | ||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| Sbjct 38563 TCGGGGATGAGCTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGTTCTC 38622 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239 ||||| ||||| |||||| | ||| ||| | ||| ||||||||||||||| | Sbjct 38623 CGCGAAATCTATTGAGGTAGACCGTCAGGTATTTACCCCGGGGGGTAGAGCACTGGATGG 38682 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 ||||||||| | | ||||||||||| |||||||||||| | | || | || Sbjct 38683 GCTAGGGGGGCCCAAAGCCTTACCAAACCTAACCAAACTCCGAATACCCGGAAG-TATAG 38741 Query 300 CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359 | || || || ||||||||||||||| | ||||||| || | || ||| | Sbjct 38742 CCTGGCAGACAGACAGTGGGTGCTAAGGTCCATTGTCGAGAGGGAAACAGCCCAGACCAC 38801 Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||||||| |||| ||||||| | || || || | | | || ||| | Sbjct 38802 CAGCTAAGGCCCCTAAATCGTGGCTAAGTGGGA--AAGGATGTGGGGATTCCAAAACAAC 38859 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 |||| |||||||| |||||||||| || |||||||| |||||| |||||||| ||| Sbjct 38860 CAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 38916 >seq4086 Length=80244 Score = 354 bits (392), Expect = 3e-95 Identities = 369/478 (77%), Gaps = 6/478 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | ||| ||||| | |||||||||||| ||||||||| |||| Sbjct 79424 CGAGTCTGAATAGGGCGTCGAGTTGCTGGCAGAAGACCCGAAACCGAGTGATCTAGCCAT 79483 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||| Sbjct 79484 GGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCCACGCCTGTTGAAAATG 79543 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | ||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| Sbjct 79544 TCGGGGATGAGCTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGTTCTC 79603 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239 ||||| ||||| |||||| | ||| ||| | ||| ||||||||||||||| | Sbjct 79604 CGCGAAATCTATTGAGGTAGACCGTCAGGTATTTACCCCGGGGGGTAGAGCACTGGATGG 79663 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 ||||||||| | | ||||||||||| |||||||||||| | | || | || Sbjct 79664 GCTAGGGGGGCCCAAAGCCTTACCAAACCTAACCAAACTCCGAATACCCGGAAG-TATAG 79722 Query 300 CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTAT 359 | || || || ||||||||||||||| | ||||||| || | || ||| | Sbjct 79723 CCTGGCAGACAGACAGTGGGTGCTAAGGTCCATTGTCGAGAGGGAAACAGCCCAGACCAC 79782 Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||||||| |||| ||||||| | || || || | | | || ||| | Sbjct 79783 CAGCTAAGGCCCCTAAATCGTGGCTAAGTGGGA--AAGGATGTGGGGATTCCAAAACAAC 79840 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 |||| |||||||| |||||||||| || |||||||| |||||| |||||||| ||| Sbjct 79841 CAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 79897 >seq5079 Length=1084440 Score = 352 bits (390), Expect = 1e-94 Identities = 370/479 (77%), Gaps = 7/479 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | ||| ||||| | |||||||||||| ||||||||| |||| Sbjct 1000095 CGAGTCTGAATAGGGCGTCGAGTTGCTGGCAGAAGACCCGAAACCGAGTGATCTAGCCAT 1000154 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||| Sbjct 1000155 GGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAG 1000214 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | ||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| Sbjct 1000215 TCGGGGATGAGCTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGTTCTC 1000274 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239 ||||| ||||| |||||| | ||| ||| | ||| ||||||||||||||| | Sbjct 1000275 CGCGAAATCTATTGAGGTAGACCGTCAGGTATTTACCCCGGGGGGTAGAGCACTGGATGG 1000334 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACT-CCGAATGCGCATCAGTTTTA 298 ||||||||| | | ||||||||||| |||||| |||||| | | || | || Sbjct 1000335 GCTAGGGGGGCCCAAAGCCTTACCAAACCTAACCAAACTCCCGAATACCCGGAAG-TATA 1000393 Query 299 CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 | || || || ||||||||||||||| | ||||||| || | || ||| | Sbjct 1000394 GCCTGGCAGACAGACAGTGGGTGCTAAGGTCCATTGTCGAGAGGGAAACAGCCCAGACCA 1000453 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 ||||||||||||| |||| ||||||| | || || || | | | || ||| Sbjct 1000454 CCAGCTAAGGCCCCTAAATCGTGGCTAAGTGGGA--AAGGATGTGGGGATTCCAAAACAA 1000511 Query 419 CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 | |||| |||||||| |||||||||| || |||||||| |||||| |||||||| ||| Sbjct 1000512 CCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 1000569 Score = 84.2 bits (92), Expect = 7e-14 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| ||| | || ||| | ||||||||||||| |||| ||||||| | | Sbjct 804888 CGAGAGG-GAACAGCCCAGACCACCAGCTAAGGCCCCTAAATCGTGGCTAAGTGGGA--A 804944 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | | | || ||| | |||| |||||||| |||||||||| || ||||||| Sbjct 804945 AGGATGTGGGGATTCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAG 805003 Query 456 AGTGCGTAACAGCTCACTAGTC 477 | |||||| |||||||| ||| Sbjct 805004 AAAGCGTAATAGCTCACTGGTC 805025 >seq4241 Length=507456 Score = 255 bits (282), Expect = 2e-65 Identities = 198/233 (85%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | ||| ||||| | |||||||||||| ||||||||| |||| Sbjct 507224 CGAGTCTGAATAGGGCGCAGAGTTGCTGGCAGAAGACCCGAAACCGAGTGATCTAGCCAT 507283 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||| Sbjct 507284 GGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAG 507343 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | ||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| Sbjct 507344 TCGGGGATGAGCTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGTTCTC 507403 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCAC 232 ||||| ||||| |||||| | ||| ||| | ||| ||||||||||||| Sbjct 507404 CGCGAAATCTATTGAGGTAGACCGTCAGGTATTTACCCCGGGGGGTAGAGCAC 507456 >seq30 Length=443100 Score = 255 bits (282), Expect = 2e-65 Identities = 198/233 (85%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | ||| ||||| | |||||||||||| ||||||||| |||| Sbjct 152712 CGAGTCTGAATAGGGCGCAGAGTTGCTGGCAGAAGACCCGAAACCGAGTGATCTAGCCAT 152771 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||| Sbjct 152772 GGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAG 152831 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | ||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| Sbjct 152832 TCGGGGATGAGCTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGTTCTC 152891 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCAC 232 ||||| ||||| |||||| | ||| ||| | ||| ||||||||||||| Sbjct 152892 CGCGAAATCTATTGAGGTAGACCGTCAGGTATTTACCCCGGGGGGTAGAGCAC 152944 >seq4112 Length=151011 Score = 251 bits (278), Expect = 2e-64 Identities = 197/233 (85%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| | ||| ||||| | |||||||||||| ||||||||| |||| Sbjct 233 CGAGTCTGAATAGGGCGTCTAGTTGCTGGCAGAAGACCCGAAACCGAGTGATCTAGCCAT 174 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||| Sbjct 173 GGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAACCCACGCCTGTTGAAAAAG 114 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | ||||||||||||||| |||||||||||||| || |||||| ||| ||||||||||||| Sbjct 113 TCGGGGATGAGCTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAGATAGCTGGTTCTC 54 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCAC 232 ||||| ||||| |||||| | ||| ||| | ||| ||||||||||||| Sbjct 53 CGCGAAATCTATTGAGGTAGACCGTCAGGTATTTACCCCGGGGGGTAGAGCAC 1 >seq4704 Length=42152 Score = 84.2 bits (92), Expect = 7e-14 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| ||| | || ||| | ||||||||||||| |||| ||||||| | | Sbjct 42150 CGAGAGG-GAACAGCCCAGACCACCAGCTAAGGCCCCTAAATCGTGGCTAAGTGGGA--A 42094 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | | | || ||| | |||| |||||||| |||||||||| || ||||||| Sbjct 42093 AGGATGTGGGGATTCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAG 42035 Query 456 AGTGCGTAACAGCTCACTAGTC 477 | |||||| |||||||| ||| Sbjct 42034 AAAGCGTAATAGCTCACTGGTC 42013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689508271616