Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq4112 190 4e-46 seq5079 181 2e-43 seq4086 181 2e-43 seq4246 178 2e-42 seq4241 178 2e-42 seq30 178 2e-42 >seq4112 Length=151011 Score = 190 bits (210), Expect = 4e-46 Identities = 231/310 (75%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||| | |||||||||||||||||| | |||||||||||| ||| Sbjct 824 GGTGGATGCCTTGGTACTAGGAGGCGATGAAGGACGTAGCACGCTGCGATAAGCTGTGGG 765 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| || | || |||||||||| |||||||||||||||| ||||| || ||||| Sbjct 764 GAGCC-GCGAGCAGGCTTTGATCCGTAGATTTCCGAATGGGGCAACCCACCCGCATGGGT 706 Query 130 CATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTA 189 || | ||||||||||||| || | |||||| ||| |||||||||||||| |||| Sbjct 705 -ATCGTGGTCTGAATACATAGGGTTGTGAGGCGAACCCGGGGAACTGAAACATCTCAGTA 647 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 ||| ||||||||| ||||| ||||||| |||||||||||||||| ||| || Sbjct 646 CCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAACGCGGAACAGG 587 Query 250 CTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGA 309 | | || ||||| || ||| |||||||| | ||||||| |||||| Sbjct 586 C---CAGTCATTTTTGAAGAAGAAGCAGAAGGGTCTGGAAA-GGCTGCCATAGTGGGTGA 531 Query 310 TAGCCCCGTA 319 ||| |||||| Sbjct 530 TAGTCCCGTA 521 >seq5079 Length=1084440 Score = 181 bits (200), Expect = 2e-43 Identities = 231/314 (74%), Gaps = 13/314 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||||||||||||||| | ||||| ||||| Sbjct 999503 GGTGGATGCCTTGG----TACCAGGAGGCGATGAAGGACGTAGCACGCTGCGAAAAGCTA 999558 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 999559 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 999617 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 999618 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 999676 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| ||| Sbjct 999677 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAACGCGGAA 999736 Query 246 GAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGG 305 || | | || ||||| || ||| |||||||| ||||||| || Sbjct 999737 CAGGC---CAGTCATTTTTGAAGAAGAAGCAGAAGGATCTGGAAAGGTCCGCCATAGTGG 999793 Query 306 GTGATAGCCCCGTA 319 |||||||||||||| Sbjct 999794 GTGATAGCCCCGTA 999807 >seq4086 Length=80244 Score = 181 bits (200), Expect = 2e-43 Identities = 231/314 (74%), Gaps = 13/314 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||||||||||||||| | ||||| ||||| Sbjct 78832 GGTGGATGCCTTGG----TACCAGGAGGCGATGAAGGACGTAGCACGCTGCGAAAAGCTA 78887 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 78888 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 78946 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 78947 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 79005 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| ||| Sbjct 79006 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAACGCGGAA 79065 Query 246 GAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGG 305 || | | || ||||| || ||| |||||||| ||||||| || Sbjct 79066 CAGGC---CAGTCATTTTTGAAGAAGAAGCAGAAGGATCTGGAAAGGTCCGCCATAGTGG 79122 Query 306 GTGATAGCCCCGTA 319 |||||||||||||| Sbjct 79123 GTGATAGCCCCGTA 79136 >seq4246 Length=39263 Score = 178 bits (196), Expect = 2e-42 Identities = 231/314 (74%), Gaps = 14/314 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||||||||||||||| | ||||| ||||| Sbjct 37852 GGTGGATGCCTTGG----TACCAGGAGGCGATGAAGGACGTAGCACGCTGCGA-AAGCTA 37906 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 37907 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 37965 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 37966 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 38024 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| ||| Sbjct 38025 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAACGCGGAA 38084 Query 246 GAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGG 305 || | | || ||||| || ||| |||||||| ||||||| || Sbjct 38085 CAGGC---CAGTCATTTTTGAAGAAGAAGCAGAAGGATCTGGAAAGGTCCGCCATAGTGG 38141 Query 306 GTGATAGCCCCGTA 319 |||||||||||||| Sbjct 38142 GTGATAGCCCCGTA 38155 >seq4241 Length=507456 Score = 178 bits (196), Expect = 2e-42 Identities = 228/310 (74%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| |||||| ||||||||||| | ||||| ||||| |||| Sbjct 506633 GGTGGATGCCTTGGCACCAGGAGGCGACGAAGGACGTAGCACGCTGCGAAAAGCTACGGG 506692 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| || | || | ||||||||||||| ||||||||||| ||||| || |||| Sbjct 506693 GAGCC-GCGAGCAGGCATTGATCCGCAGATATCCGAATGGGGCAACCCACCCGCAAGGGT 506751 Query 130 CATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTA 189 || || ||||||||||||| | | | |||||| ||| |||||||||||||| |||| Sbjct 506752 -ATCACAATCTGAATACATAGGGCTACGAGGCGAACCCGGGGAACTGAAACATCTCAGTA 506810 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 ||| ||||||||| ||||| ||||||| |||||||||||||||| ||| || Sbjct 506811 CCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAACGCGGAACAGG 506870 Query 250 CTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGA 309 | | || ||||| || ||| |||||||| | ||||||| |||||| Sbjct 506871 C---CAGTCATTTTTGAAGAAGAAGCAGAACAATCTGGAAA-GGCCGCCATAGTGGGTGA 506926 Query 310 TAGCCCCGTA 319 ||||||||| Sbjct 506927 CAGCCCCGTA 506936 >seq30 Length=443100 Score = 178 bits (196), Expect = 2e-42 Identities = 228/310 (74%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| |||||| ||||||||||| | ||||| ||||| |||| Sbjct 152121 GGTGGATGCCTTGGCACCAGGAGGCGACGAAGGACGTAGCACGCTGCGAAAAGCTACGGG 152180 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| || | || | ||||||||||||| ||||||||||| ||||| || |||| Sbjct 152181 GAGCC-GCGAGCAGGCATTGATCCGCAGATATCCGAATGGGGCAACCCACCCGCAAGGGT 152239 Query 130 CATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTA 189 || || ||||||||||||| | | | |||||| ||| |||||||||||||| |||| Sbjct 152240 -ATCACAATCTGAATACATAGGGCTACGAGGCGAACCCGGGGAACTGAAACATCTCAGTA 152298 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 ||| ||||||||| ||||| ||||||| |||||||||||||||| ||| || Sbjct 152299 CCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAACGCGGAACAGG 152358 Query 250 CTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGA 309 | | || ||||| || ||| |||||||| | ||||||| |||||| Sbjct 152359 C---CAGTCATTTTTGAAGAAGAAGCAGAACAATCTGGAAA-GGCCGCCATAGTGGGTGA 152414 Query 310 TAGCCCCGTA 319 ||||||||| Sbjct 152415 CAGCCCCGTA 152424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918350140064