Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1894 441 2e-121 seq3846 179 1e-42 seq4218 116 1e-23 seq3310 111 5e-22 seq1782 102 3e-19 seq1979 89.7 2e-15 >seq1894 Length=1117 Score = 441 bits (488), Expect = 2e-121 Identities = 318/367 (87%), Gaps = 14/367 (4%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229 ||||| || || | ||||||| |||| ||||| |||||||||||||| | ||| | Sbjct 751 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAC 810 Query 230 GAAACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 811 CAAACCGAGGTCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 870 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 871 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 930 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 931 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATG 990 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 1050 Query 459 CCGTTTA-CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 ||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1051 CCGTTGACCCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 1110 Query 518 TCACATT 524 ||||||| Sbjct 1111 TCACATT 1117 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 444 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 503 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 504 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 550 >seq3846 Length=11243 Score = 179 bits (198), Expect = 1e-42 Identities = 168/215 (78%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| || || | ||||| | |||| ||||| |||||||||||||| | ||| Sbjct 3552 GTTCCATTTAATCAAGTAAGTGAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAC 3611 Query 228 ----CCGA-----AACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| || ||||||||||||||||||||| | ||| | ||| | | Sbjct 3612 CAAACCGAGGTCTAATATGTCCCACTTATTCTACACCTCTTAGGTCTCCTTACACTGCCA 3671 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || |||||||||||| || ||||||||||||||||||| ||| ||||||||||||||| Sbjct 3672 GATTAGAGTCAAGCTGAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 3731 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||||||||||||||||||||||||||||||| Sbjct 3732 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 3766 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 3249 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 3308 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 3309 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 3355 >seq4218 Length=7876 Score = 116 bits (128), Expect = 1e-23 Identities = 67/69 (97%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1219 AGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 1278 Query 419 GAGGCATTT 427 |||| |||| Sbjct 1279 GAGGAATTT 1287 >seq3310 Length=14607 Score = 111 bits (122), Expect = 5e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 |||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||| Sbjct 13714 GCCGTTGACCCGCGCTTACTTGAATTTCTTTACTTTGACATTCAGAGCACTGGACAGAAA 13655 Query 518 TCACATTGCGTCAACA 533 |||||||| ||||||| Sbjct 13654 TCACATTGTGTCAACA 13639 >seq1782 Length=1012 Score = 102 bits (112), Expect = 3e-19 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1012 CGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTC 953 Query 530 AACA 533 |||| Sbjct 952 AACA 949 >seq1979 Length=1457 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 1255 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 1314 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 1315 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 1361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635111224992