Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq5079 358 2e-96 seq30 358 2e-96 seq4704 352 1e-94 >seq5079 Length=1084440 Score = 358 bits (396), Expect = 2e-96 Identities = 419/565 (74%), Gaps = 22/565 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||| ||| | ||||||||||| || ||| ||| || |||||| || | | || || Sbjct 1001700 TCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCAACAGCCGGTTTCC 1001641 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | ||||| ||| | | |||||||||||||| ||||||||| | |||||||||| Sbjct 1001640 GACCGGCCTGAGCCCACCATCGCGCGCCTCCGTTACACTTTGGGAGG-CGACCGCCCCAG 1001582 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| ||||||| || ||||| | | | | | | || ||||||| ||| Sbjct 1001581 TCAAACTGCCCACCATACAGGGTCCCGGATCAGGCTAACTGACCGCGGTTAGACATCAGA 1001522 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 | |||| |||||||||||| | | |||||| ||| ||| |||| ||| || Sbjct 1001521 AAAATTCAGGGTGGTATTTCAAGGATGGCTCCACGGGAACTGGCGCCCCCGCTTCAAAGC 1001462 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||||||||||| | | | |||||| | ||||| ||| ||||| | Sbjct 1001461 CTCCCACCTATCCTACACAGAATGTCTCTGATGCCACTGTAAAGCTGCAGTAAAGGTTCA 1001402 Query 301 G-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||| |||| ||||| || || ||||||| || | | | ||||||| | | Sbjct 1001401 TAGGGTCTTTCCGTCTGACCGCG-GATACCCGCATCTTCACGGGGAATTCAATTTCGCTG 1001343 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 ||| || | |||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 1001342 AGCCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1001283 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 1001282 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTC 1001223 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| ||| ||| ||||| ||||||||||||||| |||||| Sbjct 1001222 AAT--------TCA-----------GTGCTCTCACACCTCCTCTTAACCTTCCGGCACCG 1001182 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||| || ||||| ||| Sbjct 1001181 GGCAGGCGTCAGGCCCTATACGTCG 1001157 Score = 352 bits (390), Expect = 1e-94 Identities = 417/565 (74%), Gaps = 21/565 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||| ||| | ||||||||||| || ||| ||| || |||||| || | | || || Sbjct 806156 TCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCAACAGCCGGTTTCC 806097 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | ||||| ||| | | |||||||||||||| ||||||||| | |||||||||| Sbjct 806096 GACCGGCCTGAGCCCACCATCGCGCGCCTCCGTTACACTTTGGGAGG-CGACCGCCCCAG 806038 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| ||||||| || ||||| | | | | | | || ||||||| ||| Sbjct 806037 TCAAACTGCCCACCATACAGGGTCCCGGATCAGGCTAACTGACCGCGGTTAGACATCAGA 805978 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 | |||| |||||||||||| | | |||||| ||| ||| |||| ||| || Sbjct 805977 AAAATTCAGGGTGGTATTTCAAGGATGGCTCCACGGGAACTGGCGCCCCCGCTTCAAAGC 805918 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||||||||||| | | | |||||| | ||||| ||| ||||| | Sbjct 805917 CTCCCACCTATCCTACACAGAATGTCTCTGATGCCACTGTAAAGCTGCAGTAAAGGTTCA 805858 Query 301 G-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||| |||| ||||| | | ||||||| || | | | ||||||| | | Sbjct 805857 TAGGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTG 805798 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 ||| || | |||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 805797 AGCCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 805738 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 805737 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTC 805678 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| ||| ||| ||||| ||||||||||||||| |||||| Sbjct 805677 AAT--------TCA-----------GTGCTCTCACACCTCCTCTTAACCTTCCGGCACCG 805637 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||| || ||||| ||| Sbjct 805636 GGCAGGCGTCAGGCCCTATACGTCG 805612 >seq30 Length=443100 Score = 358 bits (396), Expect = 2e-96 Identities = 418/565 (74%), Gaps = 21/565 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||| ||| | ||||||||||| || ||| ||| || |||||| || | | || || Sbjct 153790 TCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCAACAGCCGGTTTCC 153731 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | ||||| ||| | | |||||||||||||| ||||||||| | |||||||||| Sbjct 153730 GACCGGCCTGAGCCCACCATCGCGCGCCTCCGTTACACTTTGGGAGG-CGACCGCCCCAG 153672 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| ||||||| || ||||| | | | | | | ||| ||||||| ||| Sbjct 153671 TCAAACTGCCCACCATACAGGGTCCCGGATCAGGCTAACTGACCACGGTTAGACATCAGA 153612 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 | |||| |||||||||||| | | ||||||| ||| ||| | || ||| || Sbjct 153611 AAAATTCAGGGTGGTATTTCAAGGATGGCTCCACAGGAACTGGCGCCCCTGCTTCAAAGC 153552 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||||||||||| | | | |||||| | ||||| ||| ||||| | Sbjct 153551 CTCCCACCTATCCTACACAGAATGTCTCTGATGCCACTGTAAAGCTGCAGTAAAGGTTCA 153492 Query 301 G-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||| |||| ||||| | | ||||||| || | | | ||||||| | | Sbjct 153491 TAGGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTG 153432 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 ||| || | |||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 153431 AGCCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 153372 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 153371 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTC 153312 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| ||| ||| ||||| ||||||||||||||| |||||| Sbjct 153311 AAT--------TCA-----------GTGCTCTCACACCTCCTCTTAACCTTCCGGCACCG 153271 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||| || ||||| ||| Sbjct 153270 GGCAGGCGTCAGGCCCTATACGTCG 153246 >seq4704 Length=42152 Score = 352 bits (390), Expect = 1e-94 Identities = 417/565 (74%), Gaps = 21/565 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||| ||| | ||||||||||| || ||| ||| || |||||| || | | || || Sbjct 40881 TCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCAACAGCCGGTTTCC 40940 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | ||||| ||| | | |||||||||||||| ||||||||| | |||||||||| Sbjct 40941 GACCGGCCTGAGCCCACCATCGCGCGCCTCCGTTACACTTTGGGAGG-CGACCGCCCCAG 40999 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| ||||||| || ||||| | | | | | | || ||||||| ||| Sbjct 41000 TCAAACTGCCCACCATACAGGGTCCCGGATCAGGCTAACTGACCGCGGTTAGACATCAGA 41059 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 | |||| |||||||||||| | | |||||| ||| ||| |||| ||| || Sbjct 41060 AAAATTCAGGGTGGTATTTCAAGGATGGCTCCACGGGAACTGGCGCCCCCGCTTCAAAGC 41119 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||||||||||| | | | |||||| | ||||| ||| ||||| | Sbjct 41120 CTCCCACCTATCCTACACAGAATGTCTCTGATGCCACTGTAAAGCTGCAGTAAAGGTTCA 41179 Query 301 G-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||| |||| ||||| | | ||||||| || | | | ||||||| | | Sbjct 41180 TAGGGTCTTTCCGTCTGACCGCGGATACCCCGCATCTTCACGGGGAATTCAATTTCGCTG 41239 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 ||| || | |||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 41240 AGCCGATGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 41299 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 41300 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTC 41359 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| ||| ||| ||||| ||||||||||||||| |||||| Sbjct 41360 AAT--------TCA-----------GTGCTCTCACACCTCCTCTTAACCTTCCGGCACCG 41400 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||| || ||||| ||| Sbjct 41401 GGCAGGCGTCAGGCCCTATACGTCG 41425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702307576704