Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1831 394 3e-107 seq5111 286 1e-74 seq1808 286 1e-74 >seq1831 Length=1301 Score = 394 bits (436), Expect = 3e-107 Identities = 404/519 (78%), Gaps = 19/519 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAA---GAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | ||| ||||||| ||||| | ||||||| Sbjct 662 GTACTCATTCCAATTACAGGGCCTCGGATGTGAGTCCTGTATTGTTATTTTTCGTCACTA 603 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 602 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 543 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 542 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 483 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 482 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 423 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTAT-TATGAATCACCAAGGA----GCCCCGAAGG 292 | |||| |||| ||| || | ||||| || ||| | || | | | | Sbjct 422 GTACAAGACCATACGA-TCTGCATGTTATCTAGAGTTCAACCAGTATAACGATCTTGCGA 364 Query 293 GCGTTGGTTTTTTATCTAATAAATACAC----CCCTTCCGAAGTCGGGGTTT-TTAGCAT 347 || | | |||| |||||||| ||| ||| | | || | ||| | |||| Sbjct 363 TCGCTTGGTTTTAGCCTAATAAAAGCACATGTCCCATAAGGTTTCATGTTTTAATTGCAT 304 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGA 405 |||||||||||||||||||||| |||||||| ||| | || || ||| || ||| | Sbjct 303 GTATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCA 246 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGC 465 |||||||| ||||||||| || || |||||||| | || | | | ||||||||||||| Sbjct 245 TAACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATGC 187 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| ||||||||||| Sbjct 186 ATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 148 >seq5111 Length=14613 Score = 286 bits (316), Expect = 1e-74 Identities = 218/257 (85%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 14283 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 14342 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 14343 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 14402 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 14403 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 14462 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 14463 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 14522 Query 238 GCTCAAGGCCATGCGAT 254 | |||| |||| |||| Sbjct 14523 GTACAAGACCATACGAT 14539 >seq1808 Length=1186 Score = 286 bits (316), Expect = 1e-74 Identities = 307/399 (77%), Gaps = 13/399 (3%) Strand=Plus/Plus Query 32 CCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCC 91 |||||||| ||||| | ||||||||||||||| | |||| |||||||||| |||||| Sbjct 791 CCCTGTATTGTTATTTTTCGTCACTACCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCC 850 Query 92 TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA 151 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 851 TGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCAGAATCGAACCCTG 910 Query 152 ATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGG 211 |||||||||||||||||| |||||||||| || || |||||||| |||||||||||| Sbjct 911 ATTCCCCGTTACCCGTTGCAACCATGGTAGTCCTAGATACTACCATCAAAAGTTGATAGG 970 Query 212 GCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTAT-TATG 270 ||||| ||||||| || | ||| ||| |||| |||| ||| || | ||||| || Sbjct 971 GCAGACATTTGAAAGATCTGTCGTCGGTACAAGACCATACGA-TCTGCATGTTATCTAGA 1029 Query 271 AATCACCAAGGA----GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTC 326 ||| | || | | | | || | | |||| |||||||| ||| | | Sbjct 1030 GTTCAACCAGTATAACGATCTTGCGATCGCTTGGTTTTAGCCTAATAAAAGCACATGTCC 1089 Query 327 C-GAAG--TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG 383 | ||| || | || | |||||||||||||||||||||||||| |||||||| ||| Sbjct 1090 CATAAGGTTCATGTTTAATTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTA- 1148 Query 384 TAAGGT--ACTATCAAATAAACGATAACTGATTTAATGA 420 | || || ||| || ||| ||||||||| |||||| Sbjct 1149 -ACTGTTAACGATCTAAGGAACCATAACTGATATAATGA 1186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510318000384