Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5214 619 1e-172 seq5242 443 2e-119 >seq5214 Length=3698012 Score = 619 bits (686), Expect = 1e-172 Identities = 1258/1854 (68%), Gaps = 33/1854 (2%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || |||||||| ||||| || ||||| | ||| || | ||||||||||||||||| Sbjct 3420203 ATCCACGGTGAACTGAATCGCGTTCGCAGCTGGCTTTGTGCGCAGATAGTACATGCCGGT 3420262 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 |||||||||||| ||| | || || || || || | | ||| | || |||||||| Sbjct 3420263 CTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCGGCTC 3420322 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCA 65255 |||||||| || || ||||||||||| || |||||| |||| |||||||||||| |||| Sbjct 3420323 TGCCACATGAATGTTGAACGACTGACTTTGGTCGATG-AACGCACCACGATCTGCGGCCA 3420381 Query 65256 TGTCAATGATACGACGTCCCG-ATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 | | ||| | ||| || || | || ||||| ||||||||||| || || |||| Sbjct 3420382 TTTTAATTGTG-GACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGAACCTTC 3420440 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 ||||| ||||||||| ||||| |||||| | | | ||| || | || ||| Sbjct 3420441 TGGGGAATGGCCTCAATGTTCTGGATTGAACCCCTGCTGGAAATGATCTGGTTCTTCATA 3420500 Query 65375 GACTCTGACCACAAACCCAAATCGAT-AAGATGTTGAACCAAGTGACGATTGATGACTTG 65433 || ||||||| ||| ||| | ||| | ||| || ||| | |||| || || Sbjct 3420501 TCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAA-TGATGGTTGACCACCTG 3420559 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||| || |||||||| || || ||| || ||||| | ||| ||| || || ||||| Sbjct 3420560 GAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAAGATTC 3420619 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| | ||||||||||| ||||| || |||||||| || |||| || ||||| Sbjct 3420620 GTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGGGAGTT 3420679 Query 65554 TCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATC 65613 | | |||| | | ||| | || || | ||| | ||||| ||| | Sbjct 3420680 CCTGACACCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAATCCCACA--GGTC---C 3420734 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 || | | || | |||||| || | ||||| |||| | || | || || Sbjct 3420735 GTGGGCTTCTT-GTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTC 3420793 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733 | | | || || || || ||| || || | |||||||| || | ||| | | Sbjct 3420794 GTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCGTA 3420853 Query 65734 ATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCAT 65793 |||||||| ||||| || | |||| | || || || ||||| ||||| || | Sbjct 3420854 GTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGGAA 3420913 Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | ||| || | | | ||| || | ||| || || || || || | |||||||| | Sbjct 3420914 TCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGCCT 3420973 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 |||||| || | | ||| || | || || | ||||| || || || || | Sbjct 3420974 CAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTTGAG 3421033 Query 65914 ATTGCGTGTCACCA-CATGCACGATACGTCG--CAATTGTTCGAAATCAAAATGTTTAGG 65970 ||| | || ||| | || | || || || || || ||||||| | || Sbjct 3421034 ATTTCTGGTAACCGTCTTG---GTGACTTCCTTCAGTTTTTTGAAATCATACGTCTTC-- 3421088 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 ||||| ||| || ||| ||| ||||||| ||||| |||||||| || Sbjct 3421089 ----TCGGGCGTGACGAACATG------TTG---AGGGCAATGGATGCCAGGTTGCACAC 3421135 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 || |||||||| || |||| |||||| || ||||||||||||| ||| ||||| || Sbjct 3421136 TGCAATCTCGTCCGGCGCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGAT 3421195 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 |||||| | |||||| || || ||||| | ||||| | ||||||| ||| ||||||||| Sbjct 3421196 GGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGG 3421255 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 | ||||||| || || || ||||||||||||||| ||| | | ||||||| ||||| Sbjct 3421256 ATTGCCGGTTTCCACCTGCGACTCAATGATGGCGAACCACAAGGACTGTGCCTTGACCGT 3421315 Query 66211 ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCA 66270 || ||| | || | | ||||| || ||| || | |||||| || ||||| Sbjct 3421316 CCGGTTCGCACGGCCCTCCTGCTCGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCA 3421375 Query 66271 TACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTC 66330 || ||| ||| | || || ||||| ||||||||||||||||| || || | || Sbjct 3421376 CACATCGTGCAGGCCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTC 3421435 Query 66331 TACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTG 66390 || || ||| || ||||| ||||||||||||||||||||||||||||| || || | Sbjct 3421436 GACGCGTTTCATGAAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATT 3421495 Query 66391 CTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGG 66450 |||||| ||||| || || | || |||||||| || | ||| | ||||| || Sbjct 3421496 CTCCTCCTTGCCGGTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGG 3421555 Query 66451 TTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC 66510 |||||||| |||||||| | || || ||||||||||| || || ||||| || || Sbjct 3421556 CTCCAGGTAAATGGCGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGC 3421615 Query 66511 GACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTC 66570 |||||||||||||| | | ||| ||||| || || || || ||||||| |||||| Sbjct 3421616 CACATTGTTGAAGACCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCA 3421675 Query 66571 GATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTT 66630 ||||| || || ||||| || || |||||||| ||||| || || |||| || Sbjct 3421676 GATGGAGGTGCCCTTGGCCCGGATGCAATGGACATTCAGTCCAATGCCTCCTGCCGATTT 3421735 Query 66631 CGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGAT 66690 |||||| || || | |||| | | ||| ||||| || || ||||| || | || Sbjct 3421736 CGAGATCATGGCGCACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCAT 3421795 Query 66691 GGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGG 66750 |||||| ||| |||| || ||||| || |||||| || | || || || || Sbjct 3421796 GGTCAGCAGGAAGCACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGG 3421855 Query 66751 TGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAAT 66810 | ||||| || ||| | | |||| ||||| ||||| | | | ||||| || Sbjct 3421856 CGAGGCGTGGGTGAAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGAT 3421915 Query 66811 GTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAG 66870 || || ||||| || |||| || |||||||| | || || || || ||| | | Sbjct 3421916 GTCCTCTCCATGGATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGAT 3421975 Query 66871 CCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | | || | | || | ||| || ||||| ||||| || | ||||||||| Sbjct 3421976 CTTTCCGTTTCTCTTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTA 3422029 >seq5242 Length=5320397 Score = 443 bits (490), Expect = 2e-119 Identities = 608/845 (72%), Gaps = 11/845 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || || || |||||||| || |||||||| ||| ||||||| ||| ||| |||| Sbjct 3388514 AGGCTGAGGCCTCTTTCTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACT 3388455 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 || | || | | || || | || ||||| || ||| |||| |||||||||| Sbjct 3388454 GGCACCGCCTCAAGGACGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCG 3388395 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || || |||||||||||||| | |||| || ||| ||||||||||| | Sbjct 3388394 CCTCCGATGGCATCGTCAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGATCA 3388335 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 ||||||| || || ||||||||||||||||| ||||||||||| || ||||||||||||| Sbjct 3388334 CGGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGT 3388275 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||| || || ||||| || |||||| |||| | | | || || ||||||| | Sbjct 3388274 ACAGCGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGGGAGTACCTGTTCAACG 3388215 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 ||||||||||||| |||||||||||||| || || || ||||| | |||||| || Sbjct 3388214 CCATCGAGACGATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCTCTGTCCTGGATCTCC- 3388156 Query 61466 GTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT 61523 | ||| |||| | || || || || | | |||||||| | || ||||| | || Sbjct 3388155 -TCCAAGTCGGCCAATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTT 3388097 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 ||||| || || ||| | || || ||| ||||||| || || || ||||| || || Sbjct 3388096 CTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACT 3388037 Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTT 61643 ||||||| ||| ||| |||| || ||||||||||| |||| ||||| || || || | Sbjct 3388036 GACCTTCTCCAACGAGCTGATCTCCCGCGACGAGGGATTGCACTGTGACTTCGCCGTGCT 3387977 Query 61644 GCTATTCAAACGCTATCTGGTGAATCGTCC--GTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 | | ||| | | | |||||| | || || | || ||||| | ||||| | Sbjct 3387976 GATGTTCCAGC---ACCTGGTGCAGCGACCCAGACG--CGAGCGCATCATCGAGATCATC 3387922 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || || ||||| || || ||||| || || || ||||| |||| || |||||| Sbjct 3387921 CGCGATGCGGTGCTCATTGAGCAGGAGTTCCTCACAGACGCCCTGCCTGTGAACCTCATC 3387862 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| |||| || ||||| ||||| ||||| ||||| || || || || |||| Sbjct 3387861 GGCATGAACTGTGACCTGATGTCCCAGTACATTGAGTTTGTGGCGGATCGCTTGCTGGTG 3387802 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 || ||||| | |||||| || || || ||||| || | |||||||| ||||| Sbjct 3387801 GAGTTGGGCGTTGGCAAGATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGATC 3387742 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGT 61941 |||||||| |||||||| ||||| |||||||| || ||||| || || || |||| Sbjct 3387741 TCGCTGGACGGCAAGACCAATTTCTTCGAGAAGAAGGTGGGCGAGTACCAGCGCATGGGC 3387682 Query 61942 GTAGC 61946 || || Sbjct 3387681 GTGGC 3387677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541694540560