Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq5079 109 2e-19 seq5078 95.1 4e-15 >seq5079 Length=1084440 Score = 109 bits (120), Expect = 2e-19 Identities = 266/402 (66%), Gaps = 6/402 (1%) Strand=Plus/Plus Query 2496 CTACCTTGAAGAATTGGTTAACAAA---TACCCAATCATCACTATCGAAGATGGTATGGA 2552 |||||||||||| || | |||| ||||| || || | || ||||| || | | Sbjct 327539 CTACCTTGAAGATCTG---ACCAAACGGTACCCCATTGTCTCCATTGAAGACGGCCTTGC 327595 Query 2553 CGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATT 2612 ||| |||||||||| || |||| ||| || ||| ||||| | || || || || Sbjct 327596 GGAAGACGACTGGGAAGGCTGGAGCCTTCTGACCGAAACCCTTGGCCGCAAGGTCCAGTT 327655 Query 2613 GGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACA 2672 |||||| || || | ||||| || || | | || || ||| | Sbjct 327656 GGTTGGGGATGATCTGTTCGTCACCAATCCCGAACGTCTGCGCCGTGGCATTCAGGCGGG 327715 Query 2673 CGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGA 2732 || || ||||| | || | ||||| ||||| ||||| || |||| ||||| | | Sbjct 327716 CGTTGGCAACTCCCTGCTGGTGAAAGTCAACCAGATCGGCACGCTGACGGAAACGCTGCA 327775 Query 2733 CGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGA 2792 || |||||| |||| | | ||||| || || || || | ||||| || ||||| Sbjct 327776 GGCCATCGAACTGGCTCACAAGGCTGGTTATACCGCCGTCATGAGCCACCGCTCTGGTGA 327835 Query 2793 AACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGAC 2852 || |||||||| || || || ||| | || || || || ||| || || || ||||| Sbjct 327836 GACGGAAGATTCCACCATTGCGGATCTGGCCGTCGCCACCAACTGCGGGCAGATCAAGAC 327895 Query 2853 AGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCA 2894 ||| || | || || ||||||||| || ||||||||||| Sbjct 327896 AGGCTCCCTCTCCCGCTCTGACCGTACCGCCAAATACAACCA 327937 >seq5078 Length=1488007 Score = 95.1 bits (104), Expect = 4e-15 Identities = 289/440 (66%), Gaps = 10/440 (2%) Strand=Plus/Plus Query 1692 CGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGTAGAAGTTTACACTGA 1751 |||||||||| | || ||| ||||| |||||||| |||||||||| || | | Sbjct 204669 CGCACGTGAAATTCTGGACAGCCGCGGCAACCCAACGGTTGAAGTAGATGTGGAGCTGGC 204728 Query 1752 ATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAACTGGTGAACACGAAGC 1811 ||| || || || || | |||||||| || || ||||| |||| || ||||| Sbjct 204729 ATCCGGCGCCAGAGGGCGTGCGGCTGTTCCTTCTGGTGCCTCAACCGGTGCGCATGAAGC 204788 Query 1812 AGTAGAACTTCGTGATGGTGA--CAAAGCTCGTTACGGTGGTCTTGGTACTCAAAAAGCA 1869 |||||||| ||||||||||| | ||| || | ||||| ||| || || || Sbjct 204789 CGTAGAACTGCGTGATGGTGACCCCAAG--CGGTTTGGTGGCAAGGGTGTTCTCAAGGCT 204846 Query 1870 GTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGACGTA-CG--TGAT 1926 ||||| ||| | | |||| | | ||| ||| | || | | || | || ||| Sbjct 204847 GTTGAGAACATTGAAAACG-AAATCCTGCCCACGCTACAGGGT--GCCGAATCGGCAGAT 204903 Query 1927 CAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAAAGGTAAACTT 1986 || | ||| ||| ||| ||||| | ||| || || || || |||||| | | Sbjct 204904 CAGATTGATATCGACAACGCCATGATTGATCTGGATGGCACACCCAACAAAAGCCGTATG 204963 Query 1987 GGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGCTGACTACCTT 2046 ||||| ||||| ||||| ||||| ||| | || | || || | || | | | || Sbjct 204964 GGTGCGAACGCCATTCTGGGTGTATCTCTTGCCATTGCCAAAGCCACGGCAGCCGAACTG 205023 Query 2047 GAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCCAACTCCAATG 2106 | ||||| || ||| ||||| |||| || | | | ||||| || || ||| Sbjct 205024 CATGTTCCGCTGTACCGCTACATTGGTGGCGTGTTTGCCCATGTTCTGCCCGTGCCGATG 205083 Query 2107 ATGAACATCATCAACGGTGG 2126 |||||||| |||||||||| Sbjct 205084 ATGAACATTGTCAACGGTGG 205103 Score = 89.7 bits (98), Expect = 2e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 2695 AAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAA 2754 || |||||||| || ||||| | || ||||| |||| || | ||||||| | Sbjct 205654 AAGGTTAACCAGATTGGTACGCTTACGGAAACGCTTGAAGCCGTGCAAATGGCCCAGCGC 205713 Query 2755 GCTGGATACACAGCAGTAGTATCA--CACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 ||||| ||||| || || ||| | || ||||| |||||||| |||||||| || || | Sbjct 205714 GCTGGTTACACTGCGGT--TATGAGCCATCGTTCTGGTGAAACGGAAGATTCCACCATTG 205771 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 | ||| | || || || || || || || || || || || || | || ||| ||| Sbjct 205772 CGGATCTGGCTGTGGCTACAAATTGCGGACAGATCAAAACCGGCTCTCTTTCCCGTTCTG 205831 Query 2873 ACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 | || | || ||||||||||| | ||||||| || Sbjct 205832 ATCGGACAGCCAAATACAACCAGCTCATTCGTATTGA 205868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156028340301876