Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1655 426 6e-117 seq1620 306 1e-80 >seq1655 Length=5713 Score = 426 bits (472), Expect = 6e-117 Identities = 454/592 (77%), Gaps = 18/592 (3%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| | ||| |||| | ||| | |||| | ||| ||| |||||| || ||||| Sbjct 4039 TCGACAATGGACCTTAG-CACCCACTGTCTGTCTGCCAGGCTAATACTTCCGGGTATTCG 4097 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC-TAGACCATCCAGTGCTCTACCTCC 119 |||||||||| || |||||| | ||||||||| ||| ||||||||||||||||| || Sbjct 4098 GAGTTTGGTTAGGTTTGGTAAGGCTTTGGGCCCCCCTAGCCCATCCAGTGCTCTACCCCC 4157 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||| || |||| | |||| ||| |||||| |||||||||||||| | || Sbjct 4158 CGGGGTAAATACCTGACGGTCTACCTCAATAGATTTCGCGGAGAACCAGCTATTTCCGAG 4217 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| |||||| ||||| || |||||||| ||| || Sbjct 4218 TTTGATTGGCCTTTCACCCCTAGCCACAGCTCATCTCCGACTTTTTCAACAGGCGTGAGT 4277 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||| |||||| || ||||| ||||| |||| |||||| ||||||||| | || Sbjct 4278 TCGGCCCTCCAGTGCGTGTTACCGCACCTTCAGCCTGGCCATGGCTAGATCACTCGGTTT 4337 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 |||||||| | || ||| | ||||||||||| ||||||||||||||||| |||| || Sbjct 4338 CGGGTCTTCTGCCAGCAACT-AGACGCCCTATTCAGACTCGCTTTCGCTACGCCTACACC 4396 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||| |||| || || || ||| |||||||| | | |||| | ||||||| ||||| Sbjct 4397 TACCGGCTTAAGCTTGCTGCA-AACAGAAACTCGCTGACCCATTATACAAAAGGTACGCC 4455 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 |||||| | ||| || |||||||| | ||||||||| |||||||||| Sbjct 4456 GTCACC----CCATAAGAG--------GCTCCGACTGCTTGTAGGCATTCGGTTTCAGGT 4503 Query 480 ACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 |||||||||||||| | ||||| |||||||||||||||||||||||||||| | ||| Sbjct 4504 -CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTA 4562 Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 |||||||||| ||||||||||||||| |||||||||| ||| |||| || Sbjct 4563 TCGGTCACCAGGGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 4614 >seq1620 Length=11727 Score = 306 bits (338), Expect = 1e-80 Identities = 382/516 (74%), Gaps = 21/516 (4%) Strand=Plus/Plus Query 89 GGCCCCCTAGACCATCCAGTG-CTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAA 147 || ||||| | ||| ||||| |||||||||| || | | ||| ||| ||||| Sbjct 10587 GGACCCCTTGTCCAAACAGTGGCTCTACCTCCATGATTCTAAATCCGAGGCTAACCCTAA 10646 Query 148 ATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACA 207 | ||||||| |||||||||||||| | ||||| | |||| ||||||| ||||||||| Sbjct 10647 AGCTATTTCGGAGAGAACCAGCTATCTCCAAGTTCGTTTGGAATTTCACCGCTATCCACA 10706 Query 208 GGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGC 267 ||||||| || |||||||| || |||||||| ||||| || ||||| || | Sbjct 10707 CCTCATCCCAGCACTTTTCAACGTACACGGGTTCGGACCTCCGGTGCGTATTACC-GCAC 10765 Query 268 TT-CAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT--AC 324 || || |||| |||||||||||||| | | ||||||||| || | || | | || Sbjct 10766 TTTCATCCTGGACATGGATAGATCACCTGGTTTCGGGTCT--ATGGCAACATACTTCAAC 10823 Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACA-CGGGTTAACCTCGCGACACAA 383 ||||||||| |||||||||||||| ||||| | | | | ||||||| || | ||| Sbjct 10824 GCCCTATTCAGACTCGCTTTCGCTTCGGCTCCGCTTTTTCAGCTTAACCTTGC-ATGCAA 10882 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACT 443 | ||||||| || ||||||| ||| |||||||| ||||| | |||| || Sbjct 10883 CTATAACTCGCCGGTTCATTCTACAAGAGGCACGCTATCACC-----CTTAAATGG---- 10933 Query 444 TCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGT 503 |||| || | |||||||||||||||| |||| ||||||||||||||| | ||||| Sbjct 10934 ---GCTCTAACTGCTTGTAGGCACATGGTTGCAGGAACTATTTCACTCCCCTTCCGGGGT 10990 Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCT 563 ||||||||||||||||||||||||| || | ||||||||||| | | ||||||||| || Sbjct 10991 GCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCACTAGGTAGTATTTAGCCT 11050 Query 564 TAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | | |||||| || | ||| |||| ||||| Sbjct 11051 TGGGAGATGGTCCTCCCGGCTTCCGACGACGTTTCA 11086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817510101504