Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1655 367 3e-99 seq1620 255 1e-65 >seq1655 Length=5713 Score = 367 bits (406), Expect = 3e-99 Identities = 338/413 (82%), Gaps = 15/413 (4%) Strand=Plus/Plus Query 9 CCACAGGTCAT-TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGT 67 |||||| |||| |||| ||||||||||| | || |||||| |||||||| || || Sbjct 4241 CCACAGCTCATCTCCG---ACTTTTTCAACAGGCGTGAGTTCGGCCCTCCAGTGCGT-GT 4296 Query 68 TACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAG 127 |||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | |||| Sbjct 4297 TACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTGCCAG 4352 Query 128 CGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTT 186 | ||||||||||||| | ||||||||||| |||||||||| | |||| | |||||||| Sbjct 4353 CAACTAGACGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTACCGGCTTAAGCTT 4411 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 || | | | || |||||||||||||||||||||||||||| ||||||| | || Sbjct 4412 -GCTGCAAACAGAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCATAAGA- 4469 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 |||||| |||||||||| |||| |||||||||| ||||||||||||||||| |||||| Sbjct 4470 -GGCTCCGACTGCTTGTAGGCATTCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGGGT 4527 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 |||||| |||||||||||||||||| ||||||||||||||| | ||||||||| || Sbjct 4528 GCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACCAGGGAGTATTTAGGCT 4587 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||| |||||||||||| |||||||| ||||| ||||| ||| ||||||| Sbjct 4588 TGGAGGGTGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTC 4640 >seq1620 Length=11727 Score = 255 bits (282), Expect = 1e-65 Identities = 321/421 (76%), Gaps = 25/421 (6%) Strand=Plus/Plus Query 7 ATCCACAGGTCATTCC-GCTAACTTTTTCAACGGTAGTCGG-TTCGGTCCTCCAGTTAGT 64 ||||||| |||| || || |||||| ||||| || ||| ||||| ||||| || || Sbjct 10700 ATCCACACCTCATCCCAGC--ACTTTT-CAACG-TACACGGGTTCGGACCTCCGGTGCGT 10755 Query 65 AGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCC 124 | ||||| || ||||| |||| ||| ||||||||| || ||||| ||||||||| | Sbjct 10756 A-TTACCGCAC-TTTCATCCTGGACAT-GGATAGATCACCTGGTTT-CGGGTCTATGGCA 10811 Query 125 CAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTC--GGTTA 181 | ||| | ||||||| | ||||||||||| |||| || |||| || || | ||| Sbjct 10812 -ACATACTTCAACGCCCTATTCAGACTCGCTTT-CGCTTCGGCTCCGCTTTTTCAGCTTA 10869 Query 182 AGCTT---TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 | ||| ||| ||| |||| |||| | |||| ||||| ||| |||| |||||| Sbjct 10870 ACCTTGCATGCAACT----ATAACTCGCCGGTTCATTCTACAAGAGGCACGCTATCACCC 10925 Query 239 AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 || ||||||| |||||||||| ||| | |||| ||||| ||||||||||||||| Sbjct 10926 TTAAA--TGGGCTCTAACTGCTTGTAGGCACATGGTTGCAGGAACTATTTCACTCCCCT- 10982 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 |||||||| |||||| |||||||||||||||||| ||||||||||||||| | |||||| Sbjct 10983 TCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCACTAGGTAGTA 11042 Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||||| |||||||| ||| ||| ||| | ||||| |||| || | |||| Sbjct 11043 TTTAGCCTTGGGAGATGGTCCTCCCGGCTTCCGACGACGTTTCACGTGTGTCGCCGTACT 11102 Query 419 C 419 | Sbjct 11103 C 11103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241538590464