Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20eugracilis_20[refseq_20GCF_5F000236325.1_202013-03-04] 4,946 sequences; 156,942,009 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1655 250 6e-64 seq1620 208 2e-51 >seq1655 Length=5713 Score = 250 bits (276), Expect = 6e-64 Identities = 309/412 (75%), Gaps = 13/412 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||| |||||||||||| |||||| |||| | | || ||| | | Sbjct 3631 CGACTACGGCTCTCGCCCTCGCCTTAGGGGCCGACTAACCCTGCGTGGATTAACCTTGCG 3690 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | ||| | | | || ||||||||||| | Sbjct 3691 CAGGAACCCTTGGACTTTCGGCGACAGTGTTTCTCGCACTGTTTGTCGCTACTCATGTCA 3750 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGG-CAGCTTCACC-ACTGACAC 177 |||||| |||| | | ||||| | | ||||||| | | |||||| || || Sbjct 3751 GCATTCGCACTTCCGATATCTCCAG-AGAGGGTCACCCCGTCTCCTTCACAGACCTACGG 3809 Query 178 GACGCTCCCCTACCCAACCA--CACAGGT-TGC---CACAGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | || || | ||| |||||||||||| | ||| || Sbjct 3810 AACGCTCCGCTACCGCGCATATCAAAGATATGCACCCACAGCTTCGGCACGTGGCTTGAG 3869 Query 232 CCCCGCTACATTATCGGCGC--GGAATCACTT-GACCAGTGAGCTATTACGCACTCTTTC 288 ||||| |||||| ||||||| || || || ||||||||||||||||||| ||||| Sbjct 3870 CCCCGTTACATTTTCGGCGCAGGGTTTCTATTAGACCAGTGAGCTATTACGCTTTCTTTA 3929 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||||||||||| ||||||||||||||||||| | | | | ||||||||||||||| Sbjct 3930 AAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAATCCCCACATCCTTTCCCA 3989 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || ||| | |||||||||||||||| || |||||||||||||||||||| Sbjct 3990 CTTAGCCACGATTTAGGGGCCTTAGCTGGTGGTCTGGGCTGTTTCCCTCTCG 4041 >seq1620 Length=11727 Score = 208 bits (230), Expect = 2e-51 Identities = 292/404 (72%), Gaps = 8/404 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||||||| ||||||||| |||||| ||||||| |||| ||| ||| | | | || Sbjct 10103 CGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGTGGACGAGCCTTCCC 10162 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | |||| |||| | | |||| | | ||||| ||| | |||||||||| || | Sbjct 10163 CAGGAAACCTTAGTCATTCGGTGAATCAGATTCTCACTGATTTTTCGCTACTCATACCGG 10222 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCAC--CACTGACACG 178 |||||||||| | |||||| | | | || |||||| | || | | Sbjct 10223 CATTCTCACTTCTAAGCGCTCCACTAGTCCTT-ACGGTCTAGCTTCGTTGCCCTTAGA-- 10279 Query 179 ACGCTCCCCTACCCAACCACACAG--GTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 |||||| |||| | | ||| || | |||||| |||| ||| | ||||||| Sbjct 10280 ACGCTCTCCTATCACGCGACAAAGTCGCGTCCACAGTCTCGGTA-ATATGCTTAGCCCCG 10338 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 || ||| ||||||| |||||||| ||| |||||||||||||||||||||| || | ||| Sbjct 10339 GTAAATTTTCGGCGCAGAATCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGGTGG 10398 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| ||||||| |||| |||||||| |||||||||| ||||| ||||| || Sbjct 10399 CTGCTTCTGAGCCAACATCCTAGTTGTCTATGCAACTCCACCGCCTTTTCCACTTAGCAT 10458 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | |||||| ||||| ||| || ||||||||||| |||| ||| Sbjct 10459 ATATTTAGGGACCTTAACTGGTGGTCTGGGCTGTTCCCCTTTCG 10502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177541755904