Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq5583 150 2e-34 >seq5583 Length=19632 Score = 150 bits (166), Expect = 2e-34 Identities = 185/249 (74%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||||| | ||||||| Sbjct 14780 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTAC-GACTTCGCAG 14722 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| || ||||| || || Sbjct 14721 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTG------CCACCCGC-CA 14669 Query 121 ACACGTCGTTCACCAGCAGTGGCAC-CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| | || | | || |||||||||||| | | |||||| | Sbjct 14668 A----TGGTTGCCCACTAACGGGTCTCGTTTATCCCGAAGTTACACGAGTAATTTGCCTA 14613 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 14612 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 14553 Query 240 TTTACGGTA 248 ||| |||| Sbjct 14552 TTTCGGGTA 14544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694361292842