Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4995 731 0.0 seq4134 322 1e-85 seq266 322 1e-85 seq1603 282 1e-73 seq229 257 5e-66 seq854 105 2e-20 >seq4995 Length=9752 Score = 731 bits (810), Expect = 0.0 Identities = 471/507 (93%), Gaps = 6/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||| || | |||||||||| |||||||||||||||||| Sbjct 6263 GTACTCATTCCAATTACAAGACCCGAAGG-GCCCTGTATCGTTATTTATTGTCACTACCT 6321 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6322 CCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6381 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 6382 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 6441 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 6442 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCA 6501 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||||||| ||| ||| ||||| | | ||| | Sbjct 6502 CAAGGCCATGCGATTCGAAAAGTTATTATGAATCATCAAAGAG-TCCGAA-GACATTGAT 6559 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA-GTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||||||||||||||||||| | ||||| || |||| | |||| ||||||||||||||||| Sbjct 6560 TTTTTATCTAATAAATACATCTCTTCCAAAGGTCGAGATTTTAAGCATGTATTAGCTCTA 6619 Query 360 GAATTACCACGGTTAT-CCATGTAGT-AAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||| Sbjct 6620 GAATTACCACAGTTATACCATGTAGTAAAGGAACTATCAAATAAACGATAACTGATTTAA 6679 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 6680 TGAGCCATTCGCAGTTTCACTGTATAAATTGCTTATACTTAGACATGCATGGCTTAATCT 6739 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 6740 TTGAGACAAGCATATGACTACTGGCAG 6766 >seq4134 Length=1009 Score = 322 bits (356), Expect = 1e-85 Identities = 344/441 (78%), Gaps = 20/441 (5%) Strand=Plus/Minus Query 78 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 558 GTATTTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 499 Query 138 GGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCAT 197 ||||||||||||| |||||||||||||||||| |||||||||| || || ||||||| Sbjct 498 GGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATGGTAGTCCTAGATACTACCAT 439 Query 198 CGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCG 257 | ||||||||||||||||| ||||||| || | ||| ||| || | |||| ||| || Sbjct 438 CAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACATGACCATACGA-TCT 380 Query 258 TTAAGTTAT-TA----TGAATCA--CCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTA 310 | ||||| || | || || || || | | || |||| |||| ||| Sbjct 379 GCATGTTATCTAGAGTTCAACCAATATAACGATCTTGCGATCGC-TTGG-TTTTAGCCTA 322 Query 311 ATAAATACACCCCTTCC--GAAG--TCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTA 365 ||||| ||| | || ||| || | ||| | |||||||||||||||||||||| Sbjct 321 ATAAAAGCACATGTCCCATAAAGGTTCATGTTTTAATTGCATGTATTAGCTCTAGAATTA 262 Query 366 CCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATGAGCC 423 |||| |||||||| || | || || ||| || ||| ||||||||| ||||||||| Sbjct 261 CCACAGTTATCCAATTA--ACTGTTAACGATCTAAGGAACCATAACTGATATAATGAGCC 204 Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 || || |||||||| | || | | | ||||||||||||||||||||||||||||||| Sbjct 203 TTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATGCATGGCTTAATCTTTGAGA 145 Query 484 CAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||| Sbjct 144 CAAGCATATAACTACTGGCAG 124 >seq266 Length=1231 Score = 322 bits (356), Expect = 1e-85 Identities = 343/438 (78%), Gaps = 21/438 (5%) Strand=Plus/Plus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141 ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 TTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 60 Query 142 TCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAA 201 ||||||||| |||||||||||||||||| |||||||||| || || |||||||| || Sbjct 61 TCGAACCCTGATTCCCCGTTACCCGTTGCAACCATGGTAGTCCTAGATACTACCATCAAA 120 Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAA 261 ||||||||||||||| ||||||| || | ||| ||| || | |||| ||| || | Sbjct 121 AGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACATGACCATACGA-TCTGCAT 179 Query 262 GTTAT-TA----TGAATCA--CCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAA 314 ||||| || | || || || || | | || |||| |||| ||||||| Sbjct 180 GTTATCTAGAGTTCAACCAATATAACGATCTTGCGATCGC-TTGG-TTTTAGCCTAATAA 237 Query 315 ATACACCCCTTCC--GAAG--TCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTACCAC 369 | ||| | || ||| || | ||| | |||||||||||||||||||||||||| Sbjct 238 AAGCACATGTCCCATAAAGGTTCATGTTTTAATTGCATGTATTAGCTCTAGAATTACCAC 297 Query 370 GGTTATCCATGTAGTAA-GGT--ACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 |||||||| ||||| || || ||| || ||| ||||||||| ||||||||| || Sbjct 298 AGTTATCCA--AAGTAACTGTTAACGATCTAAGGAACCATAACTGATATAATGAGCCTTT 355 Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 || |||||||| | || | | | |||||||||||||||||||||||||||||||||| Sbjct 356 TGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATGCATGGCTTAATCTTTGAGACAA 414 Query 487 GCATATGACTACTGGCAG 504 |||||| ||||||||||| Sbjct 415 GCATATAACTACTGGCAG 432 >seq1603 Length=1096 Score = 282 bits (312), Expect = 1e-73 Identities = 217/257 (84%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 745 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 804 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 805 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 864 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 865 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 924 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 925 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 984 Query 238 GCTCAAGGCCATGCGAT 254 | || | |||| |||| Sbjct 985 GTACATGACCATACGAT 1001 >seq229 Length=1343 Score = 257 bits (284), Expect = 5e-66 Identities = 338/455 (74%), Gaps = 34/455 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| |||| || Sbjct 916 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTAT----------TGTC-CTG 868 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 867 TATCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 808 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 |||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 807 GTTTCTGAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 748 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 747 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 688 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTAT-TA----TGAATCA--CCAAGGAGCCCCGAA 290 | || | |||| ||| | | |||| || | || || || || | | Sbjct 687 GTACATGACCATACGA-ACTGCATATTATCTAGAGTTCAACCAATATAACGATCTTGCGA 629 Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAG--TCGGGGTTT-TTAGC 345 || |||| |||| |||||||| ||| | || ||| || | ||| | || Sbjct 628 TCGC-TTGG-TTTTAGCCTAATAAAAGCACATGTCCCATAAAGGTTCATGTTTTAATTGC 571 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAAC 403 ||||||||| |||||||||||||| |||||||| ||| | || || ||| || ||| Sbjct 570 ATGTATTAG-TCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAAC 514 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACT 438 ||||||||| ||||||||| || || |||||||| Sbjct 513 CATAACTGATATAATGAGCCTTTTGCGGTTTCACT 479 >seq854 Length=1346 Score = 105 bits (116), Expect = 2e-20 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||| || || |||||||| | || | | | |||||||||||||||||||||| Sbjct 3 TAATGAGCCTTTTGCGGTTTCACTTT-TAATTCGTGTGTACTTAGACATGCATGGCTTAA 61 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||| ||||||||||| Sbjct 62 TCTTTGAGACAAGCATATAACTACTGGCAG 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510313091584