Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq5414 89.7 2e-12 seq5653 87.8 7e-12 >seq5414 Length=687357 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||||||||||| |||| ||||||||||||||||| | | || || ||||| ||| Sbjct 304628 ATCTCCTTGAGTCGCGGCACACCCAGGGTCACGTTCTTCGAGGACACACCAGCAAAATGG 304687 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201 ||||| | || |||| ||| ||| ||||| || | | |||| | || || || Sbjct 304688 AAGGTGTTCAGTGTCATCTGGGTGGCAGGCTCACCCAAACTCTGGGCGGCTAGCGCACCC 304747 Query 349202 ACCATCTCGCCGGG 349215 |||||||||||||| Sbjct 304748 ACCATCTCGCCGGG 304761 >seq5653 Length=912194 Score = 87.8 bits (96), Expect = 7e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 21715 AGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGT 21774 ||||||| || ||||| ||||| |||||||| || |||| | || || ||| || Sbjct 473920 AGATGCGCTCGCAGATGAACTGGGCAATGCGATCCCCGCGCTTCACCTCGAACTCCACGT 473861 Query 21775 CAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGG 21834 | ||||||||||| | ||| || || | ||||| | ||| ||||| || |||| Sbjct 473860 CCGAGTGGTTGAACAACACGACACCAAGGTTGCCGCGGTAATCCTCATCGACCACGCCGG 473801 Query 21835 CGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTA 21892 |||| || |||| |||||| | ||| || || || | ||||| || |||||||| Sbjct 473800 CGCCCACATCGATGAAGTTCTTAACGGCGAGTCCGGACCGTGGAGCCACCCGGCCGTA 473743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084581757889692