Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4960 167 4e-39 seq17413 111 3e-22 seq5980 109 9e-22 seq6926 107 3e-21 seq16409 91.5 3e-16 >seq4960 Length=1227 Score = 167 bits (184), Expect = 4e-39 Identities = 144/176 (82%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 |||||||| ||||||||| ||||| |||||| ||||| |||||||| |||||| | Sbjct 1227 GTGAACAAGCCAACGCTTGGTGAATTTTGCTTCACATTGATATGAAGAGCCTACATCGTA 1168 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 |||||||||| | || || ||||||||||||||| |||||||||||||||||||| |||| Sbjct 1167 GGATCAAAAATCGACCTCACTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTATGGT 1108 Query 218 AACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCC 272 |||||||||| ||||||| | | ||| || | | |||||||||||||||| Sbjct 1107 AACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATAGGCC 1053 >seq17413 Length=162499 Score = 111 bits (122), Expect = 3e-22 Identities = 91/108 (84%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 115503 AAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTATGGTAACTTTTC 115562 Query 226 TGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCC 272 || ||||||| | | ||| || | | |||||||||||||||| Sbjct 115563 TGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATAGGCC 115609 >seq5980 Length=1324 Score = 109 bits (120), Expect = 9e-22 Identities = 90/107 (84%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1126 AGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTATGGTAACTTTTCT 1067 Query 227 GGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCC 272 | ||||||| | | ||| || | | |||||||||||||||| Sbjct 1066 GACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATAGGCC 1021 >seq6926 Length=1425 Score = 107 bits (118), Expect = 3e-21 Identities = 148/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||| ||||| || || ||||| || ||| ||||| | | | |||||| Sbjct 1138 GTCATTGTTAGGGAAAAACAAAACTATCTCACAACCGTCAAAACCTAACGAATCTTCCCT 1197 Query 90 ATTAGTGGGTGAACAATC-CAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 | || ||||||||| || || || | |||||| |||| ||||| |||| Sbjct 1198 TGCATAGGATGAACAATCACATTTATTGGTGATATTTGCTTCACAATGACAGGAATAGCC 1257 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||||| | ||||| | | | ||| | ||||||||||||||| ||||||||| | | Sbjct 1258 AACATCATAAGATCACAGAACGACGACTCTATGAACGCTTGGCCGCCACAAGCACTATCT 1317 Query 209 CCCTGTGGTAACTTTTCTGGCACCTC 234 |||| | |||||||||||| |||||| Sbjct 1318 CCCTATAGTAACTTTTCTGACACCTC 1343 >seq16409 Length=8272 Score = 91.5 bits (100), Expect = 3e-16 Identities = 100/126 (79%), Gaps = 8/126 (6%) Strand=Plus/Plus Query 155 GAAGGATCAAAAA--GCAACGTCGCTATGAA-CGCTTGGCTGCCAC-AAGCCAGTTA-TC 209 ||||||||||||| | |||||||||||||| |||||| | ||||| |||||||||| || Sbjct 7086 GAAGGATCAAAAAAGGGAACGTCGCTATGAAACGCTTGACCGCCACCAAGCCAGTTAATC 7145 Query 210 CCTG-TGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA--CTAAAGGATCGA 266 ||| |||||||||||||| |||||| | | ||| || | | |||||||||| Sbjct 7146 CCTTATGGTAACTTTTCTGACACCTCCTGGTTAAAAACTCCTTTAAACCAAAAGGATCGA 7205 Query 267 TAGGCC 272 |||||| Sbjct 7206 TAGGCC 7211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854250992640