Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq17413 389 1e-105 seq17426 136 1e-29 >seq17413 Length=162499 Score = 389 bits (430), Expect = 1e-105 Identities = 406/522 (78%), Gaps = 21/522 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 109801 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 109860 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 109861 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 109920 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 109921 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 109980 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 109981 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 110040 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCAAGG---AGCCCCGAAGG 292 | |||| |||| ||| || | ||||| || | ||||| | | | | Sbjct 110041 GTACAAGACCATACGA-TCTGCATGTTATCTAGAGTTCAACCAATGTAACGATCTTGCGA 110099 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTT--TAGCATG 348 || | | |||| |||||||| ||| | |||| | ||| | ||||| | ||||| Sbjct 110100 CCGCTTGGTTTTAGCCTAATAAAAGCACACGTTCCATAAGGTCCGTGTTTTAATTGCATG 110159 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGAT 406 ||||||||||||||||||| |||||||| ||| | || || ||| || ||| || Sbjct 110160 TATTAGCTCTAGAATTACCTTAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCAT 110217 Query 407 AACTGATTTAATGAGCCATTCG--CAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||| ||||||||| || | |||||||||| | | | | |||||||||||| Sbjct 110218 AACTGATATAATGAGCCTTTTGGCGGGTTTCACTGTTAATTTCGTGTGTACTTAGACATG 110277 Query 465 CATGGCTT-AATC-TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||| |||||||||||||||| ||||||||||| Sbjct 110278 CATGGCTTAAATCTTTTGAGACAAGCATATAACTACTGGCAG 110319 >seq17426 Length=1097346 Score = 136 bits (150), Expect = 1e-29 Identities = 182/253 (72%), Gaps = 29/253 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCC----AAAAGAGCCCTGTATCAGTATTTATTGTCACTAC 58 ||||| ||||||| || || || | | ||| |||| || ||||| | |||||||| Sbjct 658789 ACTCAATCCAATTGCA-GATCCTTGGATATGAGTCCTGCATTGATATTT-TCGTCACTAC 658846 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||| | | || |||| ||||| ||||||||| |||||| |||||| Sbjct 658847 CTCGCTGAGTTGGGAGTGGGT----------------GCCTTCCTTAGATGTGTTAGCCG 658890 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 || ||||||| |||||||||||||||||||| |||||||||||| ||| ||| ||| Sbjct 658891 TTATTCAGGCTACCTCTCCGGAATCGAACCCTGATTCCCCGTTACAAGTTACAACCCTGG 658950 Query 179 TAGGCC-----ACTA--TCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 ||| || |||| ||||||| | |||||||||||||| ||||||| || | Sbjct 658951 TAGTCCTAGGTACTACTAAATACCATCAAGAGTTGATAGGGCAGGCATTTGAAAGATCTG 659010 Query 232 TCGCCGGCTCAAG 244 ||||||| |||| Sbjct 659011 TCGCCGGTACAAG 659023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510136586240