Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq17434 486 2e-132 seq17439 419 2e-112 >seq17434 Length=8399593 Score = 486 bits (538), Expect = 2e-132 Identities = 1177/1768 (67%), Gaps = 57/1768 (3%) Strand=Plus/Plus Query 65079 CGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCT 65138 |||| |||||||| || ||||| ||||||| ||| || | |||||| ||||| || |||| Sbjct 1622246 CGACGGTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCT 1622305 Query 65139 TGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGG 65198 | || || || ||| | || ||||| ||||||| | ||| |||| || ||||| | Sbjct 1622306 TAAGACCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGCTCAG 1622365 Query 65199 CCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGT 65258 ||||||| || || ||||||||||| ||||| ||| | || ||||| || ||||| | Sbjct 1622366 CCACATGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCCATTT 1622425 Query 65259 CAATGATACGACGT----CCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 |||| || || | ||||| ||||| |||||||| ||||| | || | Sbjct 1622426 ---TGAT-CGTTGTTTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTT 1622481 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 |||| || || |||| || | ||| || |||| || || || |||| ||| Sbjct 1622482 TTTGGTATGGATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTCATA 1622541 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || |||||| ||| || | | || | | ||| ||| |||| | || ||| Sbjct 1622542 TCATCATCCCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCTGG 1622601 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 ||||| |||||||| || || ||| |||||||| || || || ||||| |||||| Sbjct 1622602 AACTCACCGGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATTCA 1622661 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 | ||||| | ||||| || |||||||| ||||||||||| || || | || || || Sbjct 1622662 TTATTGCCCATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAATTG 1622721 Query 65555 CGCAATCC--GTTCATT--TCAATGTTGTGACGCAATTC--GTCCCAGTTCCACATCGGT 65608 |||| || | || || || | | | | ||| ||||||| | |||||| Sbjct 1622722 CGCACACCATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAG----AGATCGGT 1622777 Query 65609 TTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAA 65668 | | || | | ||||||||| | || | | | || | || | || Sbjct 1622778 TGGT-GT-------CTTGCCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACTT 1622829 Query 65669 CCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCG 65728 || | | | || || ||| |||| | ||| | || ||||||| || |||||| Sbjct 1622830 CCTGGATAGGTTTCATAGGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCG 1622889 Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATT---AAGTTCACGTGCCTCATCGCTCTCG 65785 ||||||| ||||| || || || || |||| |||| | ||||| |||||||| Sbjct 1622890 CCAAAATAGATGGTTTCAAAGATTTGTTGATTTAAAAGTGC---GGCCTCTTCGCTCTCA 1622946 Query 65786 TACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 || || || ||| || | || | || || | ||||| || |||||||| ||||| Sbjct 1622947 TAAGGATGACGCATTAGAATCAATGCATCCGCGAATCCTTGCACACCAATACCAATGGGT 1623006 Query 65846 CGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATG 65905 ||||| || |||||||| | ||||| || | || ||||| ||||| || || || Sbjct 1623007 CGATGGCGAAAATTGGATTTCTTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAATTATT 1623066 Query 65906 CGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGT 65965 ||||||||| || || || | || | || || ||| | | Sbjct 1623067 TTATTCAAATTCTTGGTTAC----TG---TTTTGGT--GACTTCTT-----TCAGTTTCT 1623112 Query 65966 TTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTG 66025 | | | || | | || ||||| ||||||| || | |||| ||||| | ||| Sbjct 1623113 TGAAGTCG-TACGTTTTGTCGGACGTCACAAACATGTTCAATGCAATCGATGCTAAATTG 1623171 Query 66026 CAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAG 66085 || || || || || || || || | ||||||||||||||| ||||| ||||||||||| Sbjct 1623172 CACACGGCAATTTCATCGGGTGCCGAATACTCGACAATTTCAGTGCATAGATTACTGCAT 1623231 Query 66086 CGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATG 66145 |||||||||| ||| || ||||| |||||||| ||||||| |||||| ||| |||| Sbjct 1623232 TTGATGGTGCCCACATTTTGCTGATTGCTCTTGCGGTTGCATGAGTCCTTGAACAGCATG 1623291 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTC 66205 || || ||||| ||||| || || | ||||||||||| |||||| | | || || Sbjct 1623292 TAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGATGGCAAACCAAAGTGTTTGAGCTTTA 1623351 Query 66206 ACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCA 66265 | || ||| | || | ||||| || |||| || | || || || Sbjct 1623352 ATTACTCGATTCGCTTTGCCCTCTTTCTCGTATTGAACGTACAGTTTCTCAAAATCGTCG 1623411 Query 66266 CCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCC 66325 ||||| || || || | |||||||| ||||| |||||||| |||||||| ||| Sbjct 1623412 CCCCAAACATCTTGGAGGCCGGGACACTTATGTGGGCACATCAGGGACCAATCCTCATTG 1623471 Query 66326 TGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCT 66385 ||| || || |||||| |||||||||||||| | ||| || || || || ||||| Sbjct 1623472 GCTTCGACGCGTTTCATAAACAGATCAGGTATCCATAAGGCATAAAACAGCTCACGTGCC 1623531 Query 66386 CGTTGCTCCTCAATG-CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || |||||||| || ||||| ||||| ||| || | || || || || || | ||| Sbjct 1623532 CGATGCTCCTCTTTGCCCGTG-TTTTTCTTCAAATCCATAAATTCTAATATATCCGAATG 1623590 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| || |||| |||||||| || | ||| || || |||||||| || || || || Sbjct 1623591 CCACGGCTCCAAATAGATGGCAAATGCACCCGGTCGCTTACCGCCACCCTGATCCACATA 1623650 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 ||| || ||||| ||||| ||||||| ||| || || ||||| || || ||||||| || Sbjct 1623651 GCGTGCCACATTATTGAATACACGCAGCATTGGCACCAGCCCATTCGAAGTGCCATTCGT 1623710 Query 66565 GCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 ||| || | || ||| || || ||| ||||| ||||| || || ||||| || Sbjct 1623711 GCCACAAATCGAGGTGCCTTTGGCACGAATACAATGAACGTTCAGCCCGATGCCACCAGC 1623770 Query 66625 CGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTC--- 66681 | || ||||| || || | | || | ||| ||||| ||||| || || Sbjct 1623771 GGCTTTGGAGATCATGGCGCATTGTTCGACGGATTTGAAAATGCCCTCAATCGAATCGGA 1623830 Query 66682 -ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGA 66740 ||| ||||| | ||| | || || | ||| || |||||| || | | Sbjct 1623831 GACC----ATGGTTAAAAGGAAACACGACGACATTTGCGGACGATTTGTGGCAGCGGCAA 1623886 Query 66741 AGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGA 66800 | || || || | || ||||| ||||| ||||| ||| || ||||| | Sbjct 1623887 AAAGTGTTGGCGATGCATGCGTGAAGTACCTTTCAGACAGCAGATTATAGGTCTCCACAG 1623946 Query 66801 CAGCATCAATGTTTTCGCCATGAATCCC 66828 |||||||||| | |||||||| ||||| Sbjct 1623947 CAGCATCAATATCATCGCCATGTATCCC 1623974 >seq17439 Length=18325388 Score = 419 bits (464), Expect = 2e-112 Identities = 608/848 (72%), Gaps = 23/848 (3%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| ||||| || |||||||| ||||||||||| ||| | ||||| ||||||| |||| Sbjct 9057124 AGGCCGAAGCATCATTCTGGACTGTGGAGGAGGTGGATCTATCCAAGGACATGACGGACT 9057065 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 ||| || ||| | | ||| | ||||||||| |||||||||||| ||||| |||| Sbjct 9057064 GGGTACGCTTAACAGACAATGAGCGTCATTTCATTTCACATGTGTTGGCTTTCTTCGCCG 9057005 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTG 61284 | || || || || || || |||||| | | || || ||| || ||||| ||||| | Sbjct 9057004 CCTCCGATGGCATTGTTAACGAGAATCTGGTTGAGCGCTTTAGC-CAGGAAGTGCAGATT 9056946 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 | |||||||| || ||||| || || |||||||||||||||||||| ||||| |||||| Sbjct 9056945 ACAGAGGCGCGCTGCTTCTATGGTTTTCAGATTGCCATGGAGAATGTACACTCAGAGATG 9056886 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAAT 61404 |||||||| || ||||| || || ||| | || | | || || | |||||| Sbjct 9056885 TACAGTGTGCTAATCGACACTTATATCCGAGATCCTCATCAGCGCGATTATCTCTTCAAT 9056826 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 || || || || || ||||| || ||||| || ||||| ||||| || |||||| | Sbjct 9056825 GCTATTGAAACAATGCCGGCTGTAAAGCGTAAGGCGGACTGGGCGCTCTCTTGGATTTC- 9056767 Query 61465 AGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 | ||| | || | ||||| || || | | || || || | ||||| || | | Sbjct 9056766 -ATCCAAGGCTGCCAACTTTGGGGAGCGCATTATTGCCTTCGCTGCCGTCGAAGGCATCT 9056708 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | || || || |||||| | ||||| ||| | || || ||||| || |||||||||| Sbjct 9056707 TCTTTAGCGGCAGTTTTGCCTCCATCTTCTGGCTTAAAAAGCGTGGCCTAATGCCCGGTC 9056648 Query 61583 TGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTT 61642 |||| ||| || ||| | || || || || ||||| ||||||| || ||||| ||| Sbjct 9056647 TGACTTTCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCATTGCGACTTTGCGGTTA 9056588 Query 61643 TGCTATTCAAACGCTATCTGGTGAATCGTCC--GTCGGAGGAGCGTGTGGGTGAGATTGT 61700 || | ||| | | | |||||| | ||||| | || || || | |||||| || Sbjct 9056587 TGATGTTCCAGC---ACCTGGTGCAGCGTCCCAGCCG--TGAACGCATCATTGAGATCGT 9056533 Query 61701 -TCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 ||| || || || ||||| || ||||| ||||| |||||||||||||| || || | Sbjct 9056532 CTCG-GATGCTGTGACTATTGAGCAGGAGTTTCTCACTGACGCTTTGCCTGTAAATCTGA 9056474 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819 | ||||||||||||| || ||||| | |||||||| || || ||||| || |||||| Sbjct 9056473 TTGGCATGAATTGTGCGCTGATGTCCGAATATATTGAGTTCGTGGCCGATCGCTTGTTGG 9056414 Query 61820 TCGATTTGGGTATGAAGCGG----ATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 | || | ||| | ||| || ||||| || || || |||||| ||||||||| Sbjct 9056413 TGGAGCTCGGTGT----CGGTAAAATATATAACACAAAGAATCCATTTACTTTCATGGAA 9056358 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGT 61935 |||||||| |||| || || || |||||||| ||||| || ||||| ||||| || Sbjct 9056357 ATGATTTCATTGGACGGTAAAACCAATTTTTTTGAGAAGAAAGTGGGCGAATATCAGCGC 9056298 Query 61936 TTGGGTGT 61943 |||| || Sbjct 9056297 ATGGGCGT 9056290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397483496921600